PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03773g00009.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 297aa    MW: 34148.6 Da    PI: 4.9768
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03773g00009.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.15.9e-2097147155
                       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               ++++GVr+++ +g+W+AeIrdp++   ++r++lg+f taeeAa  +++a+ +++g
  Niben101Scf03773g00009.1  97 KKFRGVRQRP-WGKWAAEIRDPVK---KTRIWLGTFETAEEAAMVYDQAAIQIRG 147
                               59********.**********654...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.56E-3397154No hitNo description
PROSITE profilePS5103223.26198155IPR001471AP2/ERF domain
SMARTSM003804.9E-3898161IPR001471AP2/ERF domain
SuperFamilySSF541713.92E-2298155IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.1E-3198155IPR001471AP2/ERF domain
PfamPF008477.2E-1398147IPR001471AP2/ERF domain
PRINTSPR003675.5E-1199110IPR001471AP2/ERF domain
PRINTSPR003675.5E-11121137IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MEGKFSQSIK KCVVHKSINS KYENKLAPKV VRISYTDCDA TDSSSDDDDY LEKKRVKKYV  60
TEIRFEKKMS CGDVKKSSNL RQKKKKTVDL KTNENVKKFR GVRQRPWGKW AAEIRDPVKK  120
TRIWLGTFET AEEAAMVYDQ AAIQIRGPDA LTNFMKPPLK KESVITSVSD YDSTGESENL  180
CSPTSVLRHN DNNVGVTATK IVTNEETKDD RKRMEFVMQN DQNRILLDDN LPLMDQCFLK  240
DFFDFRSPSP LMDDVLPAFC DDIDFPEVDF LDGNGILDED LESCTWDVND FLEDHCC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-2497163468ATERF1
3gcc_A6e-2497163468ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009758972.10.0PREDICTED: ethylene-responsive transcription factor CRF3-like
SwissprotQ9SUE35e-48CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLA0A1U7USC60.0A0A1U7USC6_NICSY; ethylene-responsive transcription factor CRF3-like
STRINGXP_009758972.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61630.12e-38cytokinin response factor 6
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]