PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03772g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 251aa    MW: 28444.9 Da    PI: 6.5093
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03772g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2574.7e-1867117256
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                y+GVr ++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+ +++g+
  Niben101Scf03772g00001.1  67 IYHGVRKRS-WGKWVSEIREPRK---KSRIWLGTFATAEMAARAHDVAAIAIKGH 117
                               69****888.**********843...6**********************999986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-1266117IPR001471AP2/ERF domain
CDDcd000182.21E-3266126No hitNo description
SMARTSM003805.2E-3667130IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.8E-3167125IPR001471AP2/ERF domain
SuperFamilySSF541715.95E-2167125IPR016177DNA-binding domain
PROSITE profilePS5103222.28667124IPR001471AP2/ERF domain
PRINTSPR003675.0E-106879IPR001471AP2/ERF domain
PRINTSPR003675.0E-1090106IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MEEKSHIFTN INNETTYSTI PHFSSSSSLS TRPITLASSK QETNNKKIKC SDMNKKTKKI  60
DDLKHPIYHG VRKRSWGKWV SEIREPRKKS RIWLGTFATA EMAARAHDVA AIAIKGHLAL  120
LNFPELVHQF PKPVSKCAKD IQAAATKAAA LNICSTNCIT EESQGELMEQ FSSEEIESRE  180
SSSSTSSLTC KNEDPFLDLP DLLLDLSQKF DKFCYYNSPW EFAGAESNDA NHSEFWSEDI  240
YLWDYNYGTV L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-18651241272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009785489.11e-145PREDICTED: ethylene-responsive transcription factor ERF038-like
RefseqXP_016492543.11e-145PREDICTED: ethylene-responsive transcription factor ERF038-like
SwissprotQ8LBQ71e-50ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A1S4BUP41e-144A0A1S4BUP4_TOBAC; ethylene-responsive transcription factor ERF038-like
TrEMBLA0A1U7XEW21e-144A0A1U7XEW2_NICSY; ethylene-responsive transcription factor ERF038-like
STRINGXP_009785489.11e-144(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.19e-35ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]