PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf03735g06010.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

BBR-BPC

Protein Properties

Length: 286aa MW: 31806.8 Da PI: 8.578

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf03735g06010.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	296.6	1e-90	1	286	32	301
GAGA_bind 32 iaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla..salp..vgvqvlsgtksidslq 112 +aerda+irern+al e+k a+aerdma lqrd+alaern+ + e d++++al l e s++ ++ p +g ++ g+k+i + q Niben101Scf03735g06010.1 1 MAERDAAIRERNMALEERKRAFAERDMAMLQRDAALAERNAVIQEIDDAIAALRLGESSINdnNVVPdsPGNDTETGAKHICNQQ 85 78**************************************************9999888764444114555555556655444 PP GAGA_bind 113 qlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesader........... 186 q ++ +++ a + +e + l + ++++e+k++kk +r+k+ +++k+ k ++++ k+ +++ +++ Niben101Scf03735g06010.1 86 Q-MHKTIAEAAHGSTEDPTARYL----KGTDTSEAKNPKKVRRPKESRHNKQAKIPRQGKIGIKSLNMQVISTSsddwvnlqeld 165 4.667777777774433322222....3445556666666667777777777776666666667777776663346778899999 PP GAGA_bind 187 ......skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgaf 265 ++ + + +l+ n++++Des++PvPvCsCtG+++ CYkWG GGWqSaCCtttiS+yPLP+ +++r +R++grKmS+gaf Niben101Scf03735g06010.1 166 sdkegdMQLTSWKDNLGFNQINFDESAMPVPVCSCTGTPQPCYKWGHGGWQSACCTTTISMYPLPQISNKRYSRVGGRKMSGGAF 250 999999555544569****************************************************************** PP GAGA_bind 266 kklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 +klL++La++Gydls p+DLkdhWAkHGtn++ t++ Niben101Scf03735g06010.1 251 SKLLNRLAGQGYDLSVPLDLKDHWAKHGTNRYSTLK 286 ******************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06217	1.4E-80	1	286	IPR010409	GAGA-binding transcriptional activator
SMART	SM01226	2.7E-91	1	286	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MAERDAAIRE RNMALEERKR AFAERDMAML QRDAALAERN AVIQEIDDAI AALRLGESSI 60 NDNNVVPDSP GNDTETGAKH ICNQQQMHKT IAEAAHGSTE DPTARYLKGT DTSEAKNPKK 120 VRRPKESRHN KQAKIPRQGK IGIKSLNMQV ISTSSDDWVN LQELDSDKEG DMQLTSWKDN 180 LGFNQINFDE SAMPVPVCSC TGTPQPCYKW GHGGWQSACC TTTISMYPLP QISNKRYSRV 240 GGRKMSGGAF SKLLNRLAGQ GYDLSVPLDL KDHWAKHGTN RYSTLK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001312785.1	0.0	barley B recombinant-like protein D
Refseq	XP_009789611.1	0.0	PREDICTED: barley B recombinant-like protein D
TrEMBL	A0A1U7XIZ5	0.0	A0A1U7XIZ5_NICSY; barley B recombinant-like protein D
TrEMBL	H1ZN84	0.0	H1ZN84_TOBAC; GAGA-binding transcriptional activator
STRING	XP_009789611.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8062	22	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42520.2	5e-77	basic pentacysteine 6