PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf03733g06006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 287aa MW: 31961.1 Da PI: 7.4779 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.4 | 9.3e-15 | 32 | 74 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++ E++ +v ++ lG++ W+ Ia+ ++ gRt++++k++w++ Niben101Scf03733g06006.1 32 GQFSEAEEQTIVTLHSVLGNR-WSVIAAQLP-GRTDNDVKNHWNT 74 789******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.356 | 1 | 25 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 9.61E-22 | 10 | 83 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.0E-10 | 11 | 37 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.645 | 26 | 80 | IPR017930 | Myb domain |
SMART | SM00717 | 3.7E-13 | 30 | 78 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-13 | 32 | 74 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.90E-10 | 34 | 76 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.1E-19 | 38 | 77 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010090 | Biological Process | trichome morphogenesis | ||||
GO:0048658 | Biological Process | anther wall tapetum development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MGRIPCCEKD NRCGKSCRLR WTNYLRPDLK HGQFSEAEEQ TIVTLHSVLG NRWSVIAAQL 60 PGRTDNDVKN HWNTKLKKKL SGMGIDAVTH KPFSHLISEI ANTLSPPQVP HLAEAALGCF 120 KDEMLHLLTK KRIGFQFQFQ QFGMANTATT VSNNVPSTSV KHEDNKHETI AKIKYGLSRA 180 IKEPEMLNPI KNWDTSNFPE NGGFNYNFAS LLNEGEGSPW NQSLCSGSTC TAGGEIQQNK 240 RVISNENCGE NSEGGKEIIT RNGSTTMFNS DCVLWDISSD DLMNPMV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-20 | 12 | 80 | 40 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential for tapetum development in anthers and microsporogenesis. May regulate the timing of tapetal programmed cell death (PCD) which is critical for pollen development. {ECO:0000269|PubMed:22086333}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019252940.1 | 0.0 | PREDICTED: transcription factor MYB80 | ||||
Swissprot | Q7XQN1 | 5e-80 | MYB80_ORYSJ; Transcription factor MYB80 | ||||
TrEMBL | A0A1J6I268 | 0.0 | A0A1J6I268_NICAT; Transcription factor myb80 | ||||
STRING | XP_009767695.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56110.1 | 2e-79 | myb domain protein 103 |