PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03732g03003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 305aa    MW: 34714.4 Da    PI: 4.9658
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03732g03003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.53.3e-182776255
                       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                              ++ GVr+++ +grWvAeI+d +   ++ r +lg+f taeeAa+a+++a+  l+g
  Niben101Scf03732g03003.1 27 KFVGVRQRP-SGRWVAEIKDTT---QKIRMWLGTFETAEEAARAYDQAACLLRG 76
                              799******.7*********32...35**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.1E-272784IPR001471AP2/ERF domain
SMARTSM003805.9E-362790IPR001471AP2/ERF domain
CDDcd000182.37E-312783No hitNo description
PROSITE profilePS5103219.5462784IPR001471AP2/ERF domain
PfamPF008476.9E-132776IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-192785IPR016177DNA-binding domain
PRINTSPR003671.1E-72839IPR001471AP2/ERF domain
PRINTSPR003671.1E-75066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MEINFQKQQQ KEAKVTKMKV RNIRSNKFVG VRQRPSGRWV AEIKDTTQKI RMWLGTFETA  60
EEAARAYDQA ACLLRGSNTR TNFVTRVSAD SPLASRIKNL LNSKKTAKQK SHDQKEQSSS  120
QNTSSVTSNN SNNSSPMITP SYFDDSVSSQ NITPIHPPEH PTQIEDYIAY DQTTFSCNQE  180
VQVQESQLFD DTYKPDLSNC SDEFDVGYSS SSASDSFSFT NSSQHEMSWN FARGYEFAQE  240
FLDHPKNVIL DETAEMGLTE FERMKMERSI SASLYAVNGV QEYIENFYDP SEPLWNLPPL  300
CSLLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-152489268ATERF1
3gcc_A2e-152489268ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the symbiotic nodule signaling pathway in response to rhizobial stimulation. Functions as a transcriptional regulator required for root infection by symbiotic rhizobia, infection thread (IT) formation, and nodule development. May coordinate these processes (PubMed:28503742, PubMed:28028038, PubMed:28068194). Functions downstream of the CCAMK-CYCLOPS complex (PubMed:28503742, PubMed:28028038). Probably not involved in arbuscular mycorrhizal (AM) symbiosis (PubMed:28068194). {ECO:0000269|PubMed:28028038, ECO:0000269|PubMed:28068194, ECO:0000269|PubMed:28503742}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in nodules 7 days after rhizobial inoculation. {ECO:0000269|PubMed:28028038, ECO:0000269|PubMed:28503742}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009757570.10.0PREDICTED: ethylene-responsive transcription factor RAP2-11-like
RefseqXP_016475325.10.0PREDICTED: ethylene-responsive transcription factor RAP2-11-like
SwissprotA0A1X9PY887e-84ERN1_LOTJA; Ethylene-responsive transcription factor ERN1
TrEMBLA0A1S4AF600.0A0A1S4AF60_TOBAC; ethylene-responsive transcription factor RAP2-11-like
TrEMBLA0A1U7V7490.0A0A1U7V749_NICSY; ethylene-responsive transcription factor RAP2-11-like
STRINGXP_009757570.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20182261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.18e-29related to AP2 11
Publications ? help Back to Top
  1. Yano K, et al.
    Function and evolution of a Lotus japonicus AP2/ERF family transcription factor that is required for development of infection threads.
    DNA Res., 2017. 24(2): p. 193-203
    [PMID:28028038]
  2. Kawaharada Y,James EK,Kelly S,Sandal N,Stougaard J
    The Ethylene Responsive Factor Required for Nodulation 1 (ERN1) Transcription Factor Is Required for Infection-Thread Formation in Lotus japonicus.
    Mol. Plant Microbe Interact., 2017. 30(3): p. 194-204
    [PMID:28068194]
  3. Cerri MR, et al.
    The ERN1 transcription factor gene is a target of the CCaMK/CYCLOPS complex and controls rhizobial infection in Lotus japonicus.
    New Phytol., 2017. 215(1): p. 323-337
    [PMID:28503742]