PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03723g03002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 511aa    MW: 57142.6 Da    PI: 5.3778
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03723g03002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.21.4e-162370148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g+WT+ Ed +l ++vk++G g+W+++ r  g+ R++k+c++rw ++l
  Niben101Scf03723g03002.1 23 KGPWTATEDAILMEYVKKHGEGNWNAVQRNSGLMRCGKSCRLRWANHL 70
                              79******************************************9986 PP
2Myb_DNA-binding49.87.8e-1676119146
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               +g++++eE+ +++++++++G++ W++ a+ ++ gRt++++k++w++
  Niben101Scf03723g03002.1  76 KGAFSPEEERIIIELHAKFGNK-WARMAAQLP-GRTDNEIKNYWNT 119
                               799*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.3141870IPR017930Myb domain
SuperFamilySSF466895.24E-3021117IPR009057Homeodomain-like
SMARTSM007175.3E-132272IPR001005SANT/Myb domain
PfamPF002491.4E-142370IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-232477IPR009057Homeodomain-like
CDDcd001671.13E-102570No hitNo description
PROSITE profilePS5129426.3871125IPR017930Myb domain
SMARTSM007171.1E-1675123IPR001005SANT/Myb domain
PfamPF002494.7E-1576119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-2678124IPR009057Homeodomain-like
CDDcd001675.15E-1278121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0090406Cellular Componentpollen tube
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MAPDDRGRKV SSGGGTSRQA LKKGPWTATE DAILMEYVKK HGEGNWNAVQ RNSGLMRCGK  60
SCRLRWANHL RPNLKKGAFS PEEERIIIEL HAKFGNKWAR MAAQLPGRTD NEIKNYWNTR  120
LKRRQRAGLP IYPQELQQQN QQENNQHQSL LSSPYDPKRT TYNNNNPPSF SLLDIFNPST  180
MKPSITQQFP LNNNSIFRDP PKGISLTLPS SIRNSQFSSL SASVPNNNFG HGLSNSMPVP  240
VPSFQNNYSS FNNFTTRPFA GTIHSNPNEL ISGINNINYP SGQSSIPVTA SSSENTGSDF  300
GSSDANNYAN VAGLSRGNSG LLEDLLEESQ TLTTRDVKIE DQNNSLDLKE EEADYKGKSL  360
WEXNYLHLKE EEADYKGKSL WEDYGLVEEE GEEAILTEES VYSFSHGVDV TLNSNSKSSS  420
PYPNLSSGKL EKEVSLQVDD DIMCLLDNFP LAVPVPNWYD ERDGKNNPNA DHKAENQAED  480
FNKSQVVTNS GPRNHDWELG GCCWNNMPSF C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-29211245107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00287DAPTransfer from AT2G32460Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009592281.10.0PREDICTED: transcription factor RAX3
TrEMBLA0A1S3Y3X80.0A0A1S3Y3X8_TOBAC; transcription factor RAX3
STRINGXP_009592281.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.13e-71myb domain protein 101