PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf03702g02001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C3H | ||||||||
Protein Properties | Length: 200aa MW: 20989.8 Da PI: 9.8428 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31.3 | 3.5e-10 | 104 | 129 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ f Ck+Gd+C+FaHg+ Niben101Scf03702g02001.1 104 KTRLCNKFNTAEGCKFGDKCNFAHGE 129 8***********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 2.4 | 37 | 64 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.676 | 37 | 65 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.63E-6 | 38 | 64 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-7 | 39 | 62 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.5E-14 | 100 | 134 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-8 | 101 | 133 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.001 | 102 | 129 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.882 | 102 | 130 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.3E-7 | 104 | 129 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50084 | 9.666 | 173 | 200 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 0.00138 | 175 | 199 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MEFGGDRKRG RPHGPMNGHG TFKKSKQELE SIPTGIGSKL KPCTKFFSTS GCPFGEGCHF 60 LHYVPGGLKA VTQMLGSNPA LPAASRNSIA PMSFPDGSSP PAVKTRLCNK FNTAEGCKFG 120 DKCNFAHGEW ELGKPMAPLH EESRGMFQTH GWYGSRPETT PAGFGAAASF GSSATAKISV 180 DASLAGPIIG KGGVNSKQIS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019250893.1 | 1e-142 | PREDICTED: zinc finger CCCH domain-containing protein 14-like | ||||
Swissprot | Q7F8R0 | 2e-61 | C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | A0A1J6JCB2 | 1e-141 | A0A1J6JCB2_NICAT; Zinc finger ccch domain-containing protein 14 | ||||
STRING | XP_009803026.1 | 1e-140 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA845 | 24 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12130.1 | 4e-32 | C3H family protein |