PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03693g10004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 208aa    MW: 24198.3 Da    PI: 6.5349
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03693g10004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.41.4e-1950102456
                               -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                               ++++++eq++ Le+ F +++++  e++ +LA +lgL+ rqV vWFqNrRa++k
  Niben101Scf03693g10004.1  50 KRKLSDEQVNLLEQSFGNEHKLESERKDKLALELGLDPRQVAVWFQNRRARWK 102
                               45899***********************************************9 PP
2HD-ZIP_I/II119.81.4e-3849140293
               HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 
                               +kr+ls+eqv+lLE+sF +e+kLe+erK +la eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+ +d+ + e++rLe+ev +
  Niben101Scf03693g10004.1  49 RKRKLSDEQVNLLEQSFGNEHKLESERKDKLALELGLDPRQVAVWFQNRRARWKSKKLEEEYSKLKSDHDTNVVEKCRLESEVLK 133
                               8************************************************************************************ PP

               HD-ZIP_I/II  87 Lreelke 93 
                               L+++l+e
  Niben101Scf03693g10004.1 134 LKDQLSE 140
                               ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.77944104IPR001356Homeobox domain
SMARTSM003892.4E-1847108IPR001356Homeobox domain
CDDcd000861.41E-1649105No hitNo description
SuperFamilySSF466893.51E-1849114IPR009057Homeodomain-like
PfamPF000461.1E-1650102IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.5E-2151111IPR009057Homeodomain-like
PRINTSPR000312.1E-57584IPR000047Helix-turn-helix motif
PROSITE patternPS00027079102IPR017970Homeobox, conserved site
PRINTSPR000312.1E-584100IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MNHQVAADEM VLISRYYPDI YTHLVPQQGE TKPRRRRKKK QGEGSGVMRK RKLSDEQVNL  60
LEQSFGNEHK LESERKDKLA LELGLDPRQV AVWFQNRRAR WKSKKLEEEY SKLKSDHDTN  120
VVEKCRLESE VLKLKDQLSE AEKEIQRLLL ERCDGVSSNN SPSTSSFSME AAMEPPFLGE  180
FGMEGLDNVF YTPDNTYVQG LDWVNLYI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13339RRRRKKK
23351RRRRKKKQGEGSGVMRKRK
33751KKKQGEGSGVMRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009590483.11e-130PREDICTED: homeobox-leucine zipper protein ATHB-40
RefseqXP_016433151.11e-130PREDICTED: homeobox-leucine zipper protein ATHB-40-like
SwissprotQ9ZU706e-78ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21
TrEMBLA0A1S3X0371e-128A0A1S3X037_TOBAC; homeobox-leucine zipper protein ATHB-40-like
STRINGXP_009590483.11e-129(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12892480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.18e-67homeobox protein 40
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]