PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf03670g02006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 247aa MW: 27308.2 Da PI: 10.0424 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.2 | 2.2e-11 | 47 | 92 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h ++Er+RR+riN+ +++L++l P++ +K +K+ +L++Av +k+L Niben101Scf03670g02006.1 47 THAMAERKRRQRINTHLHTLKKLFPHL-----PKKDKSRVLTEAVTQLKEL 92 8*************************8.....699**********999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 7.72E-13 | 34 | 101 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.484 | 43 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.31E-9 | 46 | 97 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.1E-11 | 47 | 103 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.6E-9 | 47 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.5E-8 | 49 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 2.4E-6 | 145 | 211 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MLSSLQGCNG FLQGANSVQF LHERNSNVVD EYGKSTRKNK SKDAALTHAM AERKRRQRIN 60 THLHTLKKLF PHLPKKDKSR VLTEAVTQLK ELRKKVAQQM ETQKDSEGNY NGNSGLSSFF 120 LPGENDEVLV YYSKESESDD RTVKATVCCD DRPGLNRDLS VAVQLVQGRV IKAEMATVGG 180 RTKAEMVVVL CKVGGGEEDI AQLRRALKSV VENRALGLGS SLNLGRRLGD NKWACFGGLN 240 LSACKWA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 51 | 56 | ERKRRQ |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019265405.1 | 1e-160 | PREDICTED: putative transcription factor bHLH107 | ||||
TrEMBL | A0A314L264 | 1e-159 | A0A314L264_NICAT; Transcription factor bhlh30 | ||||
STRING | XP_009779545.1 | 1e-155 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13713 | 13 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56770.1 | 1e-24 | bHLH family protein |