PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Niben101Scf03660g01004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | ZF-HD | ||||||||
Protein Properties | Length: 311aa MW: 34847.7 Da PI: 8.0573 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 104.9 | 5.1e-33 | 101 | 158 | 2 | 60 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 ++vrYkeClkNhAas+Ggh++DGCgEfm+s geegt++ lkCaAC+CHRnFHR+e+e+e Niben101Scf03660g01004.1 101 SSVRYKECLKNHAASMGGHVLDGCGEFMSS-GEEGTPEYLKCAACDCHRNFHRKETEDE 158 579**************************9.999*********************9875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 2.0E-20 | 102 | 156 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 9.3E-31 | 103 | 155 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 7.5E-31 | 104 | 154 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.067 | 105 | 154 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.52E-16 | 243 | 308 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.0E-27 | 243 | 309 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.3E-24 | 247 | 304 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 311 aa Download sequence Send to blast |
MEHTGQEKDI GMPNSIGFNS SHLNQQESAP FAAAKLSTAP IVSSLPDRTT NEQISYGNTI 60 FSPNQTLDHQ HNLTQNSDLD PTVIAAQIRQ QSSTSASDRN SSVRYKECLK NHAASMGGHV 120 LDGCGEFMSS GEEGTPEYLK CAACDCHRNF HRKETEDELQ TAGVYRNNSN SHRVHTQTPP 180 SLPAPPQQQH HHKYSHNYSR GPLPPVMMNF GGNTGVPAES SSEDLNMFHS NAGGQGVIQP 240 CAFSASKKRF RTKFTQQQKE KMQEFAEKLE WRIQKQDEQE VKQFCNEVGV KRQVFKVFMH 300 NCKQAIKRKQ T |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 1e-19 | 248 | 303 | 18 | 73 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription factor. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00268 | DAP | Transfer from AT2G18350 | Download |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009804697.1 | 0.0 | PREDICTED: zinc-finger homeodomain protein 6 | ||||
Swissprot | Q9ZPW7 | 2e-66 | ZHD6_ARATH; Zinc-finger homeodomain protein 6 | ||||
TrEMBL | A0A1U7YKV1 | 0.0 | A0A1U7YKV1_NICSY; zinc-finger homeodomain protein 6 | ||||
STRING | XP_009804697.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA518 | 24 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G18350.1 | 1e-68 | homeobox protein 24 |