PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf03660g01001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 79aa MW: 8911.97 Da PI: 8.8937 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.3 | 2.3e-10 | 8 | 52 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +WT+ E +++ +a + + ++ +W Ia+++g g++ ++k ++ Niben101Scf03660g01001.1 8 AWTPKENKKFEQALAVYDKDtpdRWQNIAKYVGGGKSVDDVKQHY 52 7*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 10.635 | 4 | 60 | IPR017884 | SANT domain |
SMART | SM00717 | 5.4E-8 | 5 | 58 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.0E-9 | 8 | 52 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.79E-13 | 8 | 63 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.73E-7 | 8 | 52 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.9E-6 | 8 | 53 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 79 aa Download sequence Send to blast |
MASNSLSAWT PKENKKFEQA LAVYDKDTPD RWQNIAKYVG GGKSVDDVKQ HYAILIEDLK 60 HIESGDVPFP KYRSGGNTR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-28 | 1 | 79 | 1 | 81 | RADIALIS |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009786616.1 | 4e-53 | PREDICTED: protein RADIALIS-like 1 | ||||
Refseq | XP_016513252.1 | 4e-53 | PREDICTED: protein RADIALIS-like 1 | ||||
Swissprot | Q1A173 | 1e-28 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A1S4DIR1 | 9e-52 | A0A1S4DIR1_TOBAC; protein RADIALIS-like 1 | ||||
TrEMBL | A0A1U7XAD3 | 9e-52 | A0A1U7XAD3_NICSY; protein RADIALIS-like 1 | ||||
STRING | XP_009786616.1 | 2e-52 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA202 | 24 | 231 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 5e-31 | RAD-like 6 |