PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf03657g02001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 163aa MW: 18086.9 Da PI: 4.7835 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 44 | 5.7e-14 | 2 | 51 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 y+ Vr + +gr++Ae++dp + +r++lg+f+tae+ a+a++ a+++++g+ Niben101Scf03657g02001.1 2 YRVVRKQP-WGRFAAEVQDPI----KkARVWLGTFDTAEDVARAYDDAARAFHGA 51 899**999.*******99962....35************************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 2.8E-25 | 1 | 64 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.994 | 1 | 58 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.7E-16 | 2 | 58 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.20E-17 | 2 | 57 | No hit | No description |
PRINTS | PR00367 | 1.6E-8 | 2 | 13 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.7E-26 | 2 | 57 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-7 | 3 | 50 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-8 | 24 | 40 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MYRVVRKQPW GRFAAEVQDP IKKARVWLGT FDTAEDVARA YDDAARAFHG AKAKTNFLVF 60 PPYGQNQFEN FNRPASSSLS STGESSSGAR DFHSRVELTS RITPSAVECY SDCDSSSTVV 120 DDNIDGDSSA FCKRPLPFDL NLLPPSDDVD DVHVTPCVFS YFN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-17 | 2 | 57 | 6 | 62 | ATERF1 |
3gcc_A | 4e-17 | 2 | 57 | 6 | 62 | ATERF1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009767438.1 | 4e-82 | PREDICTED: ethylene-responsive transcription factor 3-like | ||||
Refseq | XP_009767439.1 | 4e-82 | PREDICTED: ethylene-responsive transcription factor 3-like | ||||
Refseq | XP_009767440.1 | 4e-82 | PREDICTED: ethylene-responsive transcription factor 3-like | ||||
Refseq | XP_016503257.1 | 4e-82 | PREDICTED: ethylene-responsive transcription factor 3-like | ||||
Refseq | XP_016503258.1 | 4e-82 | PREDICTED: ethylene-responsive transcription factor 3-like | ||||
Refseq | XP_016503259.1 | 4e-82 | PREDICTED: ethylene-responsive transcription factor 3-like | ||||
TrEMBL | A0A1U7VYH4 | 1e-80 | A0A1U7VYH4_NICSY; ethylene-responsive transcription factor 3-like | ||||
TrEMBL | R4WAQ5 | 1e-80 | R4WAQ5_TOBAC; Ethylene response factor #44 | ||||
STRING | XP_009767438.1 | 2e-81 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA14369 | 9 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15210.1 | 2e-18 | ethylene responsive element binding factor 4 |