PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03570g01006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bZIP
Protein Properties Length: 431aa    MW: 47014.9 Da    PI: 6.5112
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03570g01006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.73.3e-10232290563
                               CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                    bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                               kr++r   NR +A rs +RK  +i+eLe+kv++L++e ++L  +l  l+     l++e+
  Niben101Scf03570g01006.1 232 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTETTTLCAQLTLLQRDTNGLTAEN 290
                               9********************************************99998888777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.2E-14228292IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.76230293IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1705.4E-8230286No hitNo description
PfamPF001701.6E-8232283IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.74E-11232283No hitNo description
CDDcd147031.51E-17233282No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MDKDKSSSHT VGSLPPFGRY SLFSPPGGSS NAKLEQSGLA NLPPLGPGNA SESGHFGHGL  60
SADSSRFSHD ISRMPDNPPK KFGHRRAHSE ILTLPDDISF DSDLGVVGGL DGPSLSDETE  120
EDFLSMYLDM DKFNSSSVSS DFQEGESSSS AAAASGSLQI PAMASAASGS DNVGPTASAK  180
SRVRHQHSQS MDGSTTIKPE MLMSGIDEAS PLETKKATSA AKLAELALVD PKRAKRIWAN  240
RQSAARSKER KMRYIAELER KVQTLQTETT TLCAQLTLLQ RDTNGLTAEN SELKLRLQTM  300
EQQVHLQDAL NDALKEEIQH LKVLTGQGIA NGGPMMNFPT SFGHNQQFYS NNHAMHTLLA  360
AQQLQQLQIH SHKQQHQFQQ HQLHQFQQQQ QLQHQQQLQE QLHQAGDMNS RSSLSSPQND  420
NASDTSAISK D
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor with an activatory role.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009799286.10.0PREDICTED: probable transcription factor PosF21
SwissprotQ040881e-145POF21_ARATH; Probable transcription factor PosF21
TrEMBLA0A1U7YBF90.0A0A1U7YBF9_NICSY; probable transcription factor PosF21
STRINGXP_009799286.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39652137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06070.11e-118bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]