PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03564g00018.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 522aa    MW: 57375.6 Da    PI: 8.219
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03564g00018.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.44.7e-12254292244
                               HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHH CS
                       HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiL 44 
                               r +h++ E+rRR++iN++f +Lre++P++    ++K +Ka+ L
  Niben101Scf03564g00018.1 254 RSKHSATEQRRRRKINDRFLKLREIIPHS----DQKRDKASFL 292
                               889*************************9....8999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.7E-14249310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-12250306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.106252302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.90E-9254301No hitNo description
PfamPF000101.4E-9254292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0012258302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MELPQSRTFG AEGRKKTHDF LSLYSSIEQD PRPPQGGYLK THDFLQPLEQ ARKTVGKTET  60
KVEVEATEKT PSAAHILPGG IGTYSISYLQ QSIPTPEANI FDVTQAISTD REDRHSNCSS  120
YSGCGFAIWN ESAIKKGKTG KENLAGDRHV LRGEAGVNIG GGQPTTSLER QSQLSSNHNH  180
NTATLSMLSS AQQSSAVENQ SFLNMMKSAK NAHEEDEDEE EEFIVKKESP SHSRGNLSVK  240
VDGKSSDQKP NTPRSKHSAT EQRRRRKIND RFLKLREIIP HSDQKRDKAS FLLEFLQEKV  300
HKYDGSYQGS ENKPSTLPWN KCQQMSQGFI DQSQGTNSAS SPAIICAGKF DKSKIAISAT  360
SPVNGQTLEP NRISTVKQSS QQSELTNNAA TLCKQPNAFP LCGSTCIASL QSRLAPDADS  420
LELKSQSQFW LTRSNMTDCA VTNDKLKGQE VSVEDGTISI SSVYSQRLLN TLKQALQNSG  480
LDLSQANMSG DNISTSNRSN PQLIDSSTRE ESVHAFKRLK TS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1253265RSKHSATEQRRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009793272.10.0PREDICTED: transcription factor BIM1-like isoform X1
RefseqXP_016493370.10.0PREDICTED: transcription factor BIM1-like isoform X1
TrEMBLA0A1S4BWU10.0A0A1S4BWU1_TOBAC; transcription factor BIM1-like isoform X1
TrEMBLA0A1U7XMJ40.0A0A1U7XMJ4_NICSY; transcription factor BIM1-like isoform X1
STRINGXP_009793272.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39692345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.42e-77bHLH family protein