PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03548g02037.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 234aa    MW: 26438.9 Da    PI: 4.5291
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03548g02037.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2316.2e-1054881855
                       AP2 18 eIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                              eIrdp+    + +r++lg+f tae Aa a+++a+++++g
  Niben101Scf03548g02037.1 54 EIRDPK----KaARVWLGTFETAEAAAVAYDEAALRFKG 88
                              89**84....45************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.9E-1745102IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-205397IPR001471AP2/ERF domain
PROSITE profilePS5103215.3435496IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-125497IPR016177DNA-binding domain
PfamPF008471.4E-45988IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MERGDFSSSE MEEKENNDNI DHPQLQQEIT YSARSQHDIS AMVSVLSQVI GNTEIRDPKK  60
AARVWLGTFE TAEAAAVAYD EAALRFKGNK AKLNFPEKVQ GKFQYLTNQD HHLPNNIVQQ  120
QYIATTSTNN NPLPFQEHYP SIHHYAQLLQ NDSNITDLNF GISPCYNLQL SGSLDFSQSS  180
SNSTLSELPA LTLPSSYKQE EEEVFMRFSS DFGTSSSSCA PHESNWEEFE DRKS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009780575.11e-114PREDICTED: ethylene-responsive transcription factor ERF113
RefseqXP_016448644.11e-114PREDICTED: ethylene-responsive transcription factor ERF113-like
TrEMBLA0A1S3Y9C11e-113A0A1S3Y9C1_TOBAC; ethylene-responsive transcription factor ERF113-like
TrEMBLA0A1U7X2821e-113A0A1U7X282_NICSY; ethylene-responsive transcription factor ERF113
STRINGXP_009780575.11e-113(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07310.14e-17ERF family protein