PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf03548g02003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | Trihelix | ||||||||
Protein Properties | Length: 254aa MW: 28910.1 Da PI: 4.8587 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 75.1 | 1.2e-23 | 33 | 126 | 1 | 85 |
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsess 76 rWt+qe+l+Lie+++ eer rg+ + +p+W +vs+++r++g +r+p+qC+++w+n+ +++kik++e++ + s+ Niben101Scf03548g02003.1 33 RWTRQETLVLIEGKKIAEERTHRGRksssvfgsdKPEPKWNSVSSYCRQHGANRGPVQCRKRWSNMISDFRKIKAWESQTNGSSE 117 8**************999999887555677777799******************************************9866666 PP trihelix 77 stcpyfdql 85 s + + ++l Niben101Scf03548g02003.1 118 SYWIMSNDL 126 777766666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.282 | 26 | 99 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 8.58E-5 | 31 | 104 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 4.9E-13 | 32 | 122 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-6 | 32 | 100 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MNENTTSLPD LVDGQQKPTE DTDDKSNTPR HSRWTRQETL VLIEGKKIAE ERTHRGRKSS 60 SVFGSDKPEP KWNSVSSYCR QHGANRGPVQ CRKRWSNMIS DFRKIKAWES QTNGSSESYW 120 IMSNDLRREK KLPGFFDREV YDVLDGKEFT ADAYQLALVT ITTDDKVDYG IETAEEEEEE 180 EDEQENTEAE AVSHTDGYIM SEDVMFPAME EIGSNPLKEG IAKDKKAKSI PSPTPISGKL 240 RCPSKLALLY TRTC |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009773262.1 | 1e-156 | PREDICTED: trihelix transcription factor GT-2-like | ||||
Refseq | XP_016502485.1 | 1e-156 | PREDICTED: trihelix transcription factor ASR3-like | ||||
Refseq | XP_016504881.1 | 1e-156 | PREDICTED: trihelix transcription factor ASR3-like | ||||
Swissprot | Q8VZ20 | 1e-58 | ASR3_ARATH; Trihelix transcription factor ASR3 | ||||
TrEMBL | A0A1S4CN58 | 1e-154 | A0A1S4CN58_TOBAC; trihelix transcription factor ASR3-like | ||||
TrEMBL | A0A1S4CUT0 | 1e-154 | A0A1S4CUT0_TOBAC; trihelix transcription factor ASR3-like | ||||
TrEMBL | A0A1U7VZR6 | 1e-154 | A0A1U7VZR6_NICSY; trihelix transcription factor GT-2-like | ||||
STRING | XP_009773262.1 | 1e-155 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1786 | 24 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33550.1 | 2e-60 | Trihelix family protein |
Publications ? help Back to Top | |||
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