PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf03541g00022.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRAS | ||||||||
Protein Properties | Length: 554aa MW: 61568.2 Da PI: 5.0812 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 224.5 | 5.2e-69 | 237 | 451 | 2 | 218 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 +elL +cAeavs+ d + a+ l++ l++++s +g+pm+Rl ay++e+L+arl++s+s +yk+l+++e + sse l+++++ ++ Niben101Scf03541g00022.1 237 KELLDACAEAVSDADVSTAEVLMNILEQRVSVSGEPMERLSAYVLEGLRARLLSSGSIIYKKLKCKEPT---SSELLSYMQVIYN 318 78999***************************************************************9...9************ PP GRAS 87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfA 169 ++P++kf+++ aN I ea+ +e+r+HiiDf+i qG QW+ Ll+ La Rp+gpp lRiTgv++++s + l+ +gerLa++A Niben101Scf03541g00022.1 319 MCPYYKFAYMSANVVIREAMTNENRIHIIDFQIAQGSQWMFLLHDLARRPGGPPFLRITGVDDSQSAhaRGGGLQLVGERLAEVA 403 ***************************************************************9988889999************ PP GRAS 170 eelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesv 218 +++gvpfef+ +a + +++le+L+v++gEalaVn+ ++lh+++des Niben101Scf03541g00022.1 404 KSCGVPFEFHG-AALSGCEVQLENLHVRHGEALAVNFPYMLHHMPDESS 451 ***********.8999*****************************8874 PP | |||||||
2 | GRAS | 96.7 | 3.6e-30 | 451 | 554 | 270 | 374 |
GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee 354 s++a pr++++ri+ E+++++r+ivn++aceg +r+erhe ++kWr rl++aGF+p pls ++ ++++ +l++++ + yr e+ Niben101Scf03541g00022.1 451 SINAARPRDDKQRISAEEHCVARDIVNIIACEGVDRVERHELFGKWRLRLMMAGFTPCPLSPSVGETINDVLKEYSPN-YRFAES 534 6777789*********************************************************************55.****** PP GRAS 355 sgslvlgWkdrpLvsvSaWr 374 +g+l+lgWk+r+L + SaWr Niben101Scf03541g00022.1 535 EGALYLGWKNRALATSSAWR 554 *******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 39.386 | 210 | 554 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.8E-66 | 237 | 451 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 554 aa Download sequence Send to blast |
MLRELENKLL GPESDTDDSC SCSFNDVVSK PSSLTRWNRV LDIAPSLNLK ELLDACAEAV 60 SDADMQASQR PQMSGGVHGL YNQPMQQVEQ YYAPYHFKNN NCNNTSSVTQ FAFQTQNEHF 120 FTLDSLPATD YVVYDSPPAL SVSSNRSPFS PQCSHSYMSD LHHSSDNNTC GSPFSGCSGV 180 DDGDLKHVLR ELENKLLGPE SDTDDSCSCS FNDVVSKPSS LTRWNRVLDM APSLNLKELL 240 DACAEAVSDA DVSTAEVLMN ILEQRVSVSG EPMERLSAYV LEGLRARLLS SGSIIYKKLK 300 CKEPTSSELL SYMQVIYNMC PYYKFAYMSA NVVIREAMTN ENRIHIIDFQ IAQGSQWMFL 360 LHDLARRPGG PPFLRITGVD DSQSAHARGG GLQLVGERLA EVAKSCGVPF EFHGAALSGC 420 EVQLENLHVR HGEALAVNFP YMLHHMPDES SINAARPRDD KQRISAEEHC VARDIVNIIA 480 CEGVDRVERH ELFGKWRLRL MMAGFTPCPL SPSVGETIND VLKEYSPNYR FAESEGALYL 540 GWKNRALATS SAWR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 4e-41 | 243 | 553 | 26 | 378 | Protein SCARECROW |
5b3h_A | 4e-41 | 243 | 553 | 25 | 377 | Protein SCARECROW |
5b3h_D | 4e-41 | 243 | 553 | 25 | 377 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016487801.1 | 0.0 | PREDICTED: scarecrow-like protein 13 | ||||
Swissprot | Q9M0M5 | 1e-175 | SCL13_ARATH; Scarecrow-like protein 13 | ||||
TrEMBL | A0A1S4BG19 | 0.0 | A0A1S4BG19_TOBAC; scarecrow-like protein 13 | ||||
STRING | XP_009773976.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA681 | 24 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17230.1 | 1e-176 | SCARECROW-like 13 |