PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03541g00022.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 554aa    MW: 61568.2 Da    PI: 5.0812
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03541g00022.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS224.55.2e-692374512218
                      GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                               +elL +cAeavs+ d + a+ l++ l++++s +g+pm+Rl ay++e+L+arl++s+s +yk+l+++e +   sse l+++++ ++
  Niben101Scf03541g00022.1 237 KELLDACAEAVSDADVSTAEVLMNILEQRVSVSGEPMERLSAYVLEGLRARLLSSGSIIYKKLKCKEPT---SSELLSYMQVIYN 318
                               78999***************************************************************9...9************ PP

                      GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfA 169
                               ++P++kf+++ aN  I ea+ +e+r+HiiDf+i qG QW+ Ll+ La Rp+gpp lRiTgv++++s   +   l+ +gerLa++A
  Niben101Scf03541g00022.1 319 MCPYYKFAYMSANVVIREAMTNENRIHIIDFQIAQGSQWMFLLHDLARRPGGPPFLRITGVDDSQSAhaRGGGLQLVGERLAEVA 403
                               ***************************************************************9988889999************ PP

                      GRAS 170 eelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesv 218
                               +++gvpfef+  +a +  +++le+L+v++gEalaVn+ ++lh+++des 
  Niben101Scf03541g00022.1 404 KSCGVPFEFHG-AALSGCEVQLENLHVRHGEALAVNFPYMLHHMPDESS 451
                               ***********.8999*****************************8874 PP
2GRAS96.73.6e-30451554270374
                      GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee 354
                               s++a  pr++++ri+ E+++++r+ivn++aceg +r+erhe ++kWr rl++aGF+p pls ++ ++++ +l++++ + yr  e+
  Niben101Scf03541g00022.1 451 SINAARPRDDKQRISAEEHCVARDIVNIIACEGVDRVERHELFGKWRLRLMMAGFTPCPLSPSVGETINDVLKEYSPN-YRFAES 534
                               6777789*********************************************************************55.****** PP

                      GRAS 355 sgslvlgWkdrpLvsvSaWr 374
                               +g+l+lgWk+r+L + SaWr
  Niben101Scf03541g00022.1 535 EGALYLGWKNRALATSSAWR 554
                               *******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.386210554IPR005202Transcription factor GRAS
PfamPF035141.8E-66237451IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MLRELENKLL GPESDTDDSC SCSFNDVVSK PSSLTRWNRV LDIAPSLNLK ELLDACAEAV  60
SDADMQASQR PQMSGGVHGL YNQPMQQVEQ YYAPYHFKNN NCNNTSSVTQ FAFQTQNEHF  120
FTLDSLPATD YVVYDSPPAL SVSSNRSPFS PQCSHSYMSD LHHSSDNNTC GSPFSGCSGV  180
DDGDLKHVLR ELENKLLGPE SDTDDSCSCS FNDVVSKPSS LTRWNRVLDM APSLNLKELL  240
DACAEAVSDA DVSTAEVLMN ILEQRVSVSG EPMERLSAYV LEGLRARLLS SGSIIYKKLK  300
CKEPTSSELL SYMQVIYNMC PYYKFAYMSA NVVIREAMTN ENRIHIIDFQ IAQGSQWMFL  360
LHDLARRPGG PPFLRITGVD DSQSAHARGG GLQLVGERLA EVAKSCGVPF EFHGAALSGC  420
EVQLENLHVR HGEALAVNFP YMLHHMPDES SINAARPRDD KQRISAEEHC VARDIVNIIA  480
CEGVDRVERH ELFGKWRLRL MMAGFTPCPL SPSVGETIND VLKEYSPNYR FAESEGALYL  540
GWKNRALATS SAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-4124355326378Protein SCARECROW
5b3h_A4e-4124355325377Protein SCARECROW
5b3h_D4e-4124355325377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016487801.10.0PREDICTED: scarecrow-like protein 13
SwissprotQ9M0M51e-175SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A1S4BG190.0A0A1S4BG19_TOBAC; scarecrow-like protein 13
STRINGXP_009773976.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68124111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.11e-176SCARECROW-like 13