PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03510g06011.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 378aa    MW: 41607.3 Da    PI: 6.2517
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03510g06011.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.45.6e-21169219256
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+ge
  Niben101Scf03510g06011.1 169 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRGE 219
                               59******9.**********965...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.30E-34168228No hitNo description
SMARTSM003805.8E-38169232IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-23169227IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.8E-32169227IPR001471AP2/ERF domain
PROSITE profilePS5103223.235169226IPR001471AP2/ERF domain
PRINTSPR003673.8E-11170181IPR001471AP2/ERF domain
PfamPF008472.0E-14170219IPR001471AP2/ERF domain
PRINTSPR003673.8E-11192208IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MAAAIDIYSN DSSVFSDPLS EELMKALEPF MKGASCSSSI SPSLSPCSSS SPSTSSSSSS  60
FYPFGEPNLY TDFCTIPSLS FNPMGHVAET GSIGLNHLTP SQIFQIQAQI EFQNQQQQQQ  120
QLLLQQQQSL GLLPTTPTYS KNLNSMNYLG LKPVPMKQSG GAIQKATKLY RGVRQRHWGK  180
WVAEIRLPKN RTRLWLGTFD TAEEAALAYD KAAYKLRGEF ARLNFPHLRH QLNNELSDFK  240
PLHSSVDAKL QAICQNLANS DGLSCNNNTD SKPRKSKXQA ICQNLANSDG LSCNNNTDSK  300
PRKSKKAASK LDAVQDCPEN VSVKIEATSS CSPTPSEESS SSPESDITFL DFIEPSFDES  360
ENFFLPKYPS VEIDWAAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-22168226160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-22168226463ATERF1
3gcc_A3e-22168226463ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009798155.10.0PREDICTED: ethylene-responsive transcription factor RAP2-13-like
TrEMBLA0A1U7YH540.0A0A1U7YH54_NICSY; ethylene-responsive transcription factor RAP2-13-like
STRINGXP_009798155.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16102471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.14e-47ERF family protein