PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf03502g01001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Protein Properties

Length: 707aa MW: 79310.8 Da PI: 8.4659

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf03502g01001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	35.1	2.3e-11	28	117	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 ffk+ + ++ +rl++p +fa+++ ++ ++ + le ++g++Wev++ + g++ l+ GW++F + + g f++F ++ Niben101Scf03502g01001.1 28 FFKII--LSQHECSRLRIPEDFASRYCKNMLNP--VYLEVPTGEVWEVEV--VHSHGQICLGIGWQDFSDFYSISCGHFLMFGYN 106 66766..66677789*********5454444..***********..999999************************9 PP SSSEE..EEEEE- CS B3 86 grsefelvvkvfr 98 rs f +v++f+ Niben101Scf03502g01001.1 107 ARSHF--NVTIFD 117 99999..999987 PP
2	B3	42	1.7e-13	260	332	17	93
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 ++ kfa+++ +++ +s l++ + + sW+vk+ + ++ ++ +GWk Fv +n+Lk gD +vF++++ ++ + Niben101Scf03502g01001.1 260 TVALKFARKYFLENYGSLVLRVPGRGSGSWSVKC--TTRGTNATIYSGWKAFVLDNKLKCGDACVFEVIKGTRL--F 332 67889***88888998999999999***..7787788999*******************8864333..3 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	9.7E-18	22	119	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	6.28E-17	24	119	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	8.02E-12	26	117	No hit	No description
PROSITE profile	PS50863	10.757	26	119	IPR003340	B3 DNA binding domain
Pfam	PF02362	5.5E-8	28	117	IPR003340	B3 DNA binding domain
SMART	SM01019	3.8E-7	29	119	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	1.63E-15	244	339	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	10.56	244	341	IPR003340	B3 DNA binding domain
SMART	SM01019	4.7E-9	247	341	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	9.9E-16	258	340	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	2.1E-10	260	329	IPR003340	B3 DNA binding domain
CDD	cd10017	1.83E-12	264	338	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 707 aa Download sequence Send to blast
MAAKPQLQSG EGSSIWKFST AKIPQPKFFK IILSQHECSR LRIPEDFASR YCKNMLNPVY 60 LEVPTGEVWE VEVVHSHGQI CLGIGWQDFS DFYSISCGHF LMFGYNARSH FNVTIFDLSA 120 SEIEYSYSSA HGIHTPISYS HETCHVPERD QSESDDSVEI LEGIPRSQKA EAIIPHMVEN 180 SVENLDYCPL GQSSKGQRLE GDAEDDVFAD VHIKRKKVEK LQEHVASHSF IRNGQSDLIF 240 LYSILHYVKI NLLSHLLRQT VALKFARKYF LENYGSLVLR VPGRGSGSWS VKCTTRGTNA 300 TIYSGWKAFV LDNKLKCGDA CVFEVIKGTR LFIDVTIFGA AGSTLMHKIV GVVPGGCDGK 360 SNVIKTDNCV PCSQPKVVHT KKVKQRTGDS YEEHGECTEI EHSVEILSHG PLAHGSKRKE 420 PEGEGDVSID IHTRSVNVEN KQEDADLPSI TRKTKRSGES CRMHKQKSKV VYPMNKTVLD 480 KEMSIAYQRA KAFKSENPFV IYFMQPSYVS KPYSLVSEAI NFIDFPNNLN SIHYTQFTVS 540 ILAANITLIC CEIFPRELWQ FSASCSWKRI LAGQICSGKF KIKNLFLLEG IVLDNKLNFG 600 DVCVFELIKG GSKPILDVTI FRAAESKPMY KIDAKLLGVS DHKNKTIKTE KSVPCSQPKI 660 FHRKKLNLEK KQKGDSDGFT SKIKEEHVQQ SKSSCKGSAV AKEMVSS

Sequence ? help Back to Top

Protein Sequence Length: 707 aa Download sequence Send to blast

MAAKPQLQSG EGSSIWKFST AKIPQPKFFK IILSQHECSR LRIPEDFASR YCKNMLNPVY  60
LEVPTGEVWE VEVVHSHGQI CLGIGWQDFS DFYSISCGHF LMFGYNARSH FNVTIFDLSA  120
SEIEYSYSSA HGIHTPISYS HETCHVPERD QSESDDSVEI LEGIPRSQKA EAIIPHMVEN  180
SVENLDYCPL GQSSKGQRLE GDAEDDVFAD VHIKRKKVEK LQEHVASHSF IRNGQSDLIF  240
LYSILHYVKI NLLSHLLRQT VALKFARKYF LENYGSLVLR VPGRGSGSWS VKCTTRGTNA  300
TIYSGWKAFV LDNKLKCGDA CVFEVIKGTR LFIDVTIFGA AGSTLMHKIV GVVPGGCDGK  360
SNVIKTDNCV PCSQPKVVHT KKVKQRTGDS YEEHGECTEI EHSVEILSHG PLAHGSKRKE  420
PEGEGDVSID IHTRSVNVEN KQEDADLPSI TRKTKRSGES CRMHKQKSKV VYPMNKTVLD  480
KEMSIAYQRA KAFKSENPFV IYFMQPSYVS KPYSLVSEAI NFIDFPNNLN SIHYTQFTVS  540
ILAANITLIC CEIFPRELWQ FSASCSWKRI LAGQICSGKF KIKNLFLLEG IVLDNKLNFG  600
DVCVFELIKG GSKPILDVTI FRAAESKPMY KIDAKLLGVS DHKNKTIKTE KSVPCSQPKI  660
FHRKKLNLEK KQKGDSDGFT SKIKEEHVQQ SKSSCKGSAV AKEMVSS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009798049.1	0.0	PREDICTED: putative B3 domain-containing protein Os03g0621600 isoform X1
TrEMBL	A0A1U7YFN7	0.0	A0A1U7YFN7_NICSY; putative B3 domain-containing protein Os03g0621600 isoform X1
STRING	XP_009798049.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA759	18	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	2e-16	B3 family protein