PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03494g12028.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family SBP
Protein Properties Length: 346aa    MW: 37417.8 Da    PI: 9.0237
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03494g12028.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP48.91.7e-15911204776
                               SSEEETTT--SS--S-STTTT-------S- CS
                       SBP  47 srfhelsefDeekrsCrrrLakhnerrrkk 76 
                                rfh+l efD++krsCrrrLa+hnerrrk+
  Niben101Scf03494g12028.1  91 CRFHRLPEFDQGKRSCRRRLAGHNERRRKP 120
                               69**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114112.38331120IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.101.5E-481107IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.16E-1291124IPR004333Transcription factor, SBP-box
PfamPF031104.4E-892119IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MDARSTLSKS PTWISSYIVY IGLNSFDRTF NLVIQLKQCG VFFIMKMVLA LTNLLSAIDG  60
VDIHSCKIQG LTISLISCFT LPGIDCRYFA CRFHRLPEFD QGKRSCRRRL AGHNERRRKP  120
PPGSLLSNRY GSLSSSIFEN NGRSGSFLVD FTAYPNLTGG AWPNTRSSDR GWDNQSTASG  180
KLLQSHWLNS SENPTSDLVL QGSVARGANY SGPGIIPSGN CFSGVSDSNG ALSLLSNEPW  240
GSRNQSSSLG VNGLVNTDGG HTVHPSGSHA APVNHYSGPL WGFKGNEASS SSHAIPPDLG  300
LGHISQHAVN QYSGEPGMAQ HSGRQYMGLE HSKGYNSSVQ NVHWTL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016498370.10.0PREDICTED: squamosa promoter-binding-like protein 9
TrEMBLA0A1S4CB560.0A0A1S4CB56_TOBAC; squamosa promoter-binding-like protein 9
STRINGXP_009792000.11e-175(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45712241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.14e-30squamosa promoter binding protein-like 9