PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf03479g03001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 239aa MW: 27270.4 Da PI: 7.2015 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 38.6 | 2.7e-12 | 107 | 148 | 3 | 51 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 +GV++ k+ +W A I++ +k+++lg+ gt eeAa+++++a+ Niben101Scf03479g03001.1 107 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGTQEEAARLYDRAAF 148 79**98..47*********4.....5********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.2E-6 | 106 | 149 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.6E-5 | 106 | 163 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.03E-8 | 107 | 151 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.28E-11 | 108 | 159 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 7.9E-7 | 109 | 152 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MVSIRRRKLL GLCSGRSSFL VPLPKFSENG HIAENHFLNN KPTSVHPMPS TDIDESKERT 60 AVKIVPGSSN GHASGSLIEQ TAQQFPEVKR RKRHRRKHFE NQEPCLMRGV YFKNMKWQAA 120 IKVDKKQIHL GTVGTQEEAA RLYDRAAFMC GREPNFEISE EEKQELSQFK WDEFLAFTRS 180 AITNKKTRRR SGVGARRKSE PLSSTLNSEE EDEDEDEEGE PESNSFSASE DIEQDVSLS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016461280.1 | 1e-152 | PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 | ||||
TrEMBL | A0A1S3Z9Z8 | 1e-150 | A0A1S3Z9Z8_TOBAC; ethylene-responsive transcription factor-like protein At4g13040 | ||||
STRING | XP_009758059.1 | 1e-147 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6246 | 24 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13040.1 | 1e-47 | ERF family protein |