PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf03479g02014.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Protein Properties

Length: 289aa MW: 32861.8 Da PI: 4.7009

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf03479g02014.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	30.9	4.7e-10	139	218	11	83
HHT..T-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 11 lks..grlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 ++ g l lp k ++e +g e+k ltl d +g++W++ l ks++y+l++ W ++++ +Lk+ D+++++ Niben101Scf03479g02014.1 139 NRCigGGLKLPLKLVREKillhisgpaDGG--EGKPLTLVDHKGKKWDMLL--VLKSNKYYLRGKWYRYAEKYKLKDSDTIIIE 218 333557799999999999999999876434..4566*************..999999********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	7.2E-12	123	221	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.73E-13	128	226	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.68E-11	128	220	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MSNQRKGKEP QTQEVDDRDR DATMAPTVTE PIFHYLSDDD LEYLHITKKI RTDGSFQIND 60 CNPMIKNVSE MEESDAAVDP RDLVHEAILE KVRNEEPIIT NEERIEDHSV QLTTSGGQTI 120 TSTKREELFS KRLNKSDLNR CIGGGLKLPL KLVREKILLH ISGPADGGEG KPLTLVDHKG 180 KKWDMLLVLK SNKYYLRGKW YRYAEKYKLK DSDTIIIEKI PISKEQVKEV VDFAAVNKIG 240 DHDWDTSCED QQIETKDIGK AEVAYEITIE RGPGNTATEQ EDDSSGDEE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009791938.1	1e-168	PREDICTED: uncharacterized protein LOC104239105
TrEMBL	A0A314L790	1e-171	A0A314L790_NICAT; Uncharacterized protein
STRING	XP_009791938.1	1e-167	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14765	2	3