PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03461g04011.1
Common NameNbWRKY12
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 525aa    MW: 57143 Da    PI: 8.336
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03461g04011.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.28.2e-34232288259
                               --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               dDgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers  d++v+ei+Y+g+Hnh+
  Niben101Scf03461g04011.1 232 DDGYNWRKYGQKQVKGSEYPRSYYKCTHSNCPVKKKVERSL-DGQVTEIIYKGQHNHQ 288
                               8****************************************.***************8 PP
2WRKY1079.5e-34410468159
                               ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               ldDgy+WrKYGqK+vkg+++prsYY+Cts+gC+v+k+ver+a+dpk+v++tYeg+Hnh+
  Niben101Scf03461g04011.1 410 LDDGYRWRKYGQKVVKGNPYPRSYYKCTSQGCNVRKHVERAATDPKAVITTYEGKHNHD 468
                               59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.4E-30225290IPR003657WRKY domain
SuperFamilySSF1182901.57E-26229290IPR003657WRKY domain
SMARTSM007741.8E-37231289IPR003657WRKY domain
PfamPF031065.8E-26232288IPR003657WRKY domain
PROSITE profilePS5081123.973232290IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-37395470IPR003657WRKY domain
SuperFamilySSF1182907.98E-30402470IPR003657WRKY domain
PROSITE profilePS5081139.157405470IPR003657WRKY domain
SMARTSM007745.7E-40410469IPR003657WRKY domain
PfamPF031062.8E-26411468IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MAENEGSSSS SSTSRAQLLR PTITLPPRNS MESLFSGVSS GISPGPMTLV SSFFSDNDPD  60
SDCRSFSQLL AGAMSSPASF SSVRPGFPPV PPPSTAGPAH EYKQNRPTGL VISQSPTTFT  120
VPPGLSPGGL LDGFFSPGQS PFGMSHQQVL AQFTTQAAQA QSQLHIRPDY PSSSTAAAAS  180
LPQFQSLASN TAANQLIPPP ALNPNIVKES SDVSLSDQRS EPASFVVDKP ADDGYNWRKY  240
GQKQVKGSEY PRSYYKCTHS NCPVKKKVER SLDGQVTEII YKGQHNHQPP QSSKRSKESG  300
NTNGNYNLQG SYEPSSEGLA GNFNKPKEGE TSYLLRMKDQ ESIQANDQIS GSSDSEEVGG  360
AETRVGGRDI DERESKRRAV EVQTSDAACS HRTVTEPRII VQTTSEVDLL DDGYRWRKYG  420
QKVVKGNPYP RSYYKCTSQG CNVRKHVERA ATDPKAVITT YEGKHNHDVP AARNSSHNTA  480
NNSMSQLRPH NAVVDKPAAL RKTDFPNNEQ QQPIALLRFK EEQIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-42232471878Probable WRKY transcription factor 4
2lex_A1e-42232471878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00260DAPTransfer from AT2G03340Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009794188.10.0PREDICTED: probable WRKY transcription factor 4
SwissprotQ9ZQ701e-165WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A0P0UVN00.0A0A0P0UVN0_NICBE; Transcription factor
STRINGXP_009794188.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41072445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-142WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Adachi H, et al.
    WRKY Transcription Factors Phosphorylated by MAPK Regulate a Plant Immune NADPH Oxidase in Nicotiana benthamiana.
    Plant Cell, 2015. 27(9): p. 2645-63
    [PMID:26373453]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]