PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf03441g00006.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 193aa MW: 21887.8 Da PI: 7.3374

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf03441g00006.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	130.9	5.6e-41	26	124	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +Ca+Ck+l+r+C+++C +apyf +++pkkfanvhk+FGasnv+k+l+++pe++red+++slvyeAe+r+rdPvyG++g i +lq+ Niben101Scf03441g00006.1 26 SCAGCKFLKRRCTPHCQFAPYFRSDEPKKFANVHKVFGASNVSKILNEVPEDQREDTVNSLVYEAEVRLRDPVYGCIGAIASLQR 110 6********************************************************************************** PP DUF260 86 qleqlkaelallke 99 + +l+++l l+++ Niben101Scf03441g00006.1 111 KTVELQHDLMLART 124 ******998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.104	25	126	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.4E-40	26	123	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MKSQNRIKVN FEEKGMKSNE PRSSSSCAGC KFLKRRCTPH CQFAPYFRSD EPKKFANVHK 60 VFGASNVSKI LNEVPEDQRE DTVNSLVYEA EVRLRDPVYG CIGAIASLQR KTVELQHDLM 120 LARTRLAYFA AKQNPTTNCS LMLDYDPFNV ANMMPSDFVD VPVTAGYLDS YVQNSFDMDH 180 CASTNEFGQF PFP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-46	21	130	6	115	LOB family transfactor Ramosa2.1
5ly0_B	4e-46	21	130	6	115	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016497209.1	1e-133	PREDICTED: LOB domain-containing protein 21-like
Swissprot	Q9SRL8	1e-59	LBD21_ARATH; LOB domain-containing protein 21
TrEMBL	A0A1S4C8C5	1e-131	A0A1S4C8C5_TOBAC; LOB domain-containing protein 21-like
STRING	XP_009630248.1	1e-126	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11090.1	5e-62	LOB domain-containing protein 21

Publications ? help Back to Top
Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol., 2007. 144(1): p. 32-42 [PMID:17351049]