PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03435g01017.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 1049aa    MW: 116513 Da    PI: 4.9334
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03435g01017.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding431.1e-13853248
                              SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              g W   Ede+l+ av ++G+++W++I++ +  ++++kqck rw+ +l
  Niben101Scf03435g01017.1  8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53
                              78*****************************.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.008257IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-16560IPR009057Homeodomain-like
SMARTSM007177.0E-15655IPR001005SANT/Myb domain
PfamPF002491.3E-11853IPR001005SANT/Myb domain
CDDcd001674.39E-121053No hitNo description
SuperFamilySSF466891.16E-1433103IPR009057Homeodomain-like
CDDcd116591.97E-2355102No hitNo description
SMARTSM007170.004158101IPR001005SANT/Myb domain
PROSITE profilePS512949.57359103IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.0E-761100IPR009057Homeodomain-like
PfamPF139212.9E-661106No hitNo description
PfamPF118313.0E-58402644IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1049 aa     Download sequence    Send to blast
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKA  60
KEDEKLLHLA KLMPTQWRTI APIVGRTPSQ CLERYEKLLD AACAKDENYD PNDDPRKLKP  120
GEIDPNPESK PARPDPVDMD EDEKEMLSEA RARLANTRGK KAKRKAREKQ LEEARRLASL  180
QKRRELKAAG IDARQRKRKR RGIDYNAEIP FEKKPPPGFY DVAEEDRPVE QPKFPTTIEE  240
LEGERRVDKE ARLRKQDIAR NKIAERQDAP TAILHANKLN DPEAVRKRSK LNLPAPQIPD  300
HELEAIAKIG IASDLLGGDE LSQGNAATRA LLANYAQTPH HAMTPMRTPQ RTPSTKQDAI  360
MMEAENQRRL TQSQTPLLGG DNPMLHPSDF SGVTPKKREV QTPNPLLTPS ATPGATGLTP  420
RIGMTPSRDS YGMTPKGTPM RDELHINEEM DMHNNAKLGQ PNSKKELLSG LKSLPQPKNE  480
YQIVVQQPHE ENEEPPEENI EEDMSDRIAR EKAEEEARQQ ALLRKRSKVL QRELPRPPIA  540
SLELIRSSLL RADEDKSSFV PPTLIEQADE MIRKELLSLL EHDNSKYPLD VKAEKEKKKG  600
VKRKVVAEPA IEDFEEDELK EADGLIKDEA QFVRVAMGHE GESLDEFVEA HKTTLNDIMY  660
FPTRNAYGLS SVAGNMEKLA ALQNEFENLK KKMDDDTKKA TKLEQKIKVL TNGYQIEATF  720
KQMDTAGTEL ECFRALQKQE QLAASHRINN LWEEVQKQKE LERTLQKRYG DLIADKEKMQ  780
HLMDEFRIQA QMQEEIAAKN RALELAKAEM EEKQNTFAAT EAGVEPSGTG QCSNSEETSS  840
ASAAHVSSSA IEADDVPVES LETGQCSNAE EKSASATHVS SSAIEADDMP AESSEAGQCS  900
NAEEKSDTAT HVSSSAMEAD DVPVESSEAG QCSNAEEKSA SAAHVSSSAI EAGDVPVESS  960
EAGQCSNAEG KSASAANDAT PQDAVKVISD DSTMDAEAIS ENVHMEGQQN CIRESNQDVT  1020
KTEDSGVAGD APRDVTKVED SIVASDAGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L0.027803799Cell division cycle 5-like protein
5xjc_L0.027803799Cell division cycle 5-like protein
5yzg_L0.027803799Cell division cycle 5-like protein
5z56_L0.027803799Cell division cycle 5-like protein
5z57_L0.027803799Cell division cycle 5-like protein
5z58_L0.027803799Cell division cycle 5-like protein
6ff4_L0.027803799Cell division cycle 5-like protein
6ff7_L0.027803799Cell division cycle 5-like protein
6icz_L0.027803799Cell division cycle 5-like protein
6id0_L0.027803799Cell division cycle 5-like protein
6id1_L0.027803799Cell division cycle 5-like protein
6qdv_O0.027803799Cell division cycle 5-like protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1181200KRRELKAAGIDARQRKRKRR
2194200QRKRKRR
3195200RKRKRR
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009798344.10.0PREDICTED: cell division cycle 5-like protein
SwissprotP929480.0CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLA0A1U7YGI30.0A0A1U7YGI3_NICSY; cell division cycle 5-like protein
STRINGXP_009798344.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA61392431
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.10.0cell division cycle 5
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]