PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf03422g04024.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | SBP | ||||||||
Protein Properties | Length: 220aa MW: 23522.3 Da PI: 8.7528 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 112.9 | 1.9e-35 | 137 | 208 | 1 | 72 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT----- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhner 72 +CqvegC+ +ls+akey+ +h+vC+ hsk+p+v+++g+ rfCqqCsrfh+lsefDe+krsC rrL++hn+r Niben101Scf03422g04024.1 137 RCQVEGCNLNLSSAKEYYWKHRVCDSHSKCPKVTIAGVACRFCQQCSRFHSLSEFDEKKRSCHRRLSDHNAR 208 6*********************************************************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.3E-31 | 131 | 199 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 27.889 | 135 | 212 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 4.05E-33 | 136 | 211 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.2E-28 | 138 | 208 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MFGSKAAKSP KELQLTDWGV EEDGELDAGS FNLSSGGSGS GTGGYVSDVG RGSSIKSSIS 60 ASTDSSPKEG LKASNFSFDG SPEDLSSVEP LVGLKLGKRI FETIGGAKIS SFPEKPVSSA 120 AAAKKTKSST QNAPTPRCQV EGCNLNLSSA KEYYWKHRVC DSHSKCPKVT IAGVACRFCQ 180 QCSRFHSLSE FDEKKRSCHR RLSDHNARPV QLGKDFFIVL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 7e-22 | 138 | 208 | 11 | 81 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019226025.1 | 1e-109 | PREDICTED: squamosa promoter-binding-like protein 3 | ||||
Refseq | XP_019226026.1 | 1e-109 | PREDICTED: squamosa promoter-binding-like protein 3 | ||||
Swissprot | A2X0Q6 | 5e-43 | SPL3_ORYSI; Squamosa promoter-binding-like protein 3 | ||||
Swissprot | A3A2Z8 | 5e-43 | SPL3_ORYSJ; Squamosa promoter-binding-like protein 3 | ||||
TrEMBL | A0A314KU74 | 1e-108 | A0A314KU74_NICAT; Squamosa promoter-binding-like protein 3 | ||||
STRING | XP_009766987.1 | 1e-100 | (Nicotiana sylvestris) | ||||
STRING | XP_009620616.1 | 1e-100 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4129 | 24 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43270.3 | 6e-39 | squamosa promoter binding protein-like 2 |