PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03422g02007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 301aa    MW: 32976.6 Da    PI: 7.4754
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03422g02007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.10.000771982361255
                               HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               R +++ +++  L +l+ +      +K + a++L +A+ YI  Lq
  Niben101Scf03422g02007.1 198 RKEKLGDRITALHQLVSPF-----GKTDTASVLSEAIGYITFLQ 236
                               6677889999999999998.....8****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.68E-6182240No hitNo description
PROSITE profilePS5088811.103186235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-10196246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-7196244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MAGNPTNNWW NMMMKGSMHP NHESQQFSSS SSSSSQHFYG SSNFLADINI QSQDFPRSWS  60
QLLLSGLSGE QEKSGMSHYH QYKKLQEKWE EVQSLNSINP SSSCFRVPVV DVKPQVVGHV  120
LYDNYQDLPA ASSPANSCVT TNLSHDILNF SGNKITSKVE ARHQHPDHPS ESNSTSSGGI  180
TKKARVQHSS AQPSLKVRKE KLGDRITALH QLVSPFGKTD TASVLSEAIG YITFLQGQIQ  240
ALSSPYMGNV AGSMGHIHQQ SDSQVKDLRS RGLCLVPISC THVENDTVGD YWAPALGGGY  300
L
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019224898.10.0PREDICTED: transcription factor bHLH68-like isoform X2
SwissprotQ8S3D11e-45BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A1S3Z5F50.0A0A1S3Z5F5_TOBAC; transcription factor bHLH68-like isoform X2
TrEMBLA0A314KWA30.0A0A314KWA3_NICAT; Transcription factor bhlh68
STRINGXP_009774580.10.0(Nicotiana sylvestris)
STRINGXP_009628050.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15192247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.12e-46bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]