PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf03407g02002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 332aa MW: 37566.3 Da PI: 8.4056 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 174.4 | 3.2e-54 | 26 | 153 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWka Niben101Scf03407g02002.1 26 LPPGFRFHPTDEELVVYYLKKKAASAPLPV-DIIAEVDLYKFDPWELPAKANFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKA 109 79****************************.99***************99999******************************** PP NAM 86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 tg+dk+v+++ ++++vg+kk Lvfy g+ pkg+kt+W+mheyr+ Niben101Scf03407g02002.1 110 TGTDKPVFTAgGNQKVGVKKALVFYGGKPPKGVKTNWIMHEYRI 153 *********977788***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-65 | 19 | 188 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 62.285 | 26 | 187 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.6E-28 | 27 | 153 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MENTTDSSSG TPPPRLQPLQ LPQPQLPPGF RFHPTDEELV VYYLKKKAAS APLPVDIIAE 60 VDLYKFDPWE LPAKANFGEQ EWYFFSPRDR KYPNGARPNR AATSGYWKAT GTDKPVFTAG 120 GNQKVGVKKA LVFYGGKPPK GVKTNWIMHE YRIVENKTNN KPPGCDIANK KGSLRLDDWV 180 LCRIYKKNDT QRPIDHLERD DMNDIMGSSI PQCIPNSIFP FEHNMYEGII NNNTSDMINN 240 NVGLISSSVL LPKRPLPAGL YWNEEHNVNS PSAKRFLAEN SLNNGLNMNT TRPDEHNSFL 300 SQLPQNQVSG SLNDEVVFRQ PYNQVTGLNW YS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-75 | 21 | 190 | 12 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-75 | 21 | 190 | 12 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-75 | 21 | 190 | 12 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-75 | 21 | 190 | 12 | 168 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-75 | 21 | 190 | 15 | 171 | NAC domain-containing protein 19 |
3swm_B | 2e-75 | 21 | 190 | 15 | 171 | NAC domain-containing protein 19 |
3swm_C | 2e-75 | 21 | 190 | 15 | 171 | NAC domain-containing protein 19 |
3swm_D | 2e-75 | 21 | 190 | 15 | 171 | NAC domain-containing protein 19 |
3swp_A | 2e-75 | 21 | 190 | 15 | 171 | NAC domain-containing protein 19 |
3swp_B | 2e-75 | 21 | 190 | 15 | 171 | NAC domain-containing protein 19 |
3swp_C | 2e-75 | 21 | 190 | 15 | 171 | NAC domain-containing protein 19 |
3swp_D | 2e-75 | 21 | 190 | 15 | 171 | NAC domain-containing protein 19 |
4dul_A | 2e-75 | 21 | 190 | 12 | 168 | NAC domain-containing protein 19 |
4dul_B | 2e-75 | 21 | 190 | 12 | 168 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016466988.1 | 0.0 | PREDICTED: NAC transcription factor 56-like | ||||
Swissprot | Q9LD44 | 1e-111 | NAC56_ARATH; NAC transcription factor 56 | ||||
TrEMBL | A0A1S3ZRT2 | 0.0 | A0A1S3ZRT2_TOBAC; NAC transcription factor 56-like | ||||
STRING | XP_009759753.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1814 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15510.1 | 1e-110 | NAC domain containing protein 2 |
Publications ? help Back to Top | |||
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