PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03398g06007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 314aa    MW: 34297.1 Da    PI: 9.7307
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03398g06007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox573.2e-18130184256
                               T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                               rk+ +++keq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Niben101Scf03398g06007.1 130 RKKLRLSKEQSAYLEESFKEHHTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 184
                               778899***********************************************98 PP
2HD-ZIP_I/II1283.9e-41130220192
               HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85 
                               +kk+rlskeq++ LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +
  Niben101Scf03398g06007.1 130 RKKLRLSKEQSAYLEESFKEHHTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCESLTEENRRLHKELQ 214
                               69*********************************************************************************** PP

               HD-ZIP_I/II  86 eLreelk 92 
                               eLr +lk
  Niben101Scf03398g06007.1 215 ELR-ALK 220
                               **9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.9E-18105187IPR009057Homeodomain-like
SuperFamilySSF466896.84E-19121187IPR009057Homeodomain-like
PROSITE profilePS5007117.167126186IPR001356Homeobox domain
SMARTSM003895.1E-16128190IPR001356Homeobox domain
CDDcd000861.77E-15130187No hitNo description
PfamPF000461.4E-15130184IPR001356Homeobox domain
PROSITE patternPS000270161184IPR017970Homeobox, conserved site
PfamPF021832.5E-11186220IPR003106Leucine zipper, homeobox-associated
SMARTSM003408.8E-26186229IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MELGLSLGDI NTTTTTTAAA SSKSFFLSKN IKTSSSDQDQ RSSENGLSGN GGLPAARAFD  60
VNRVPPAGTE EVSSPNSIAS SFRMDFGLFR SANIIGNKRN SDSGGGNDGG EPERASSRAS  120
DEDENGVNTR KKLRLSKEQS AYLEESFKEH HTLNPKQKLA LAKQLNLRPR QVEVWFQNRR  180
ARTKLKQTEV DCEYLKRCCE SLTEENRRLH KELQELRALK SSNPFYMQLP ATTLTMCPAC  240
ERMATTTSAT ASPPTTAAGT TTPKSPTPIP TTTTTTTTSD SMPKAIPFLN SRPRFFPFNT  300
TTNSPNHPHQ SAAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128134TRKKLRL
2178186RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015066232.11e-161homeobox-leucine zipper protein HOX11-like
SwissprotP466651e-85HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A1S4CHX71e-154A0A1S4CHX7_TOBAC; homeobox-leucine zipper protein HOX11-like
STRINGXP_009617361.11e-155(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.14e-68homeobox from Arabidopsis thaliana