PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03390g12008.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 364aa    MW: 41841.5 Da    PI: 4.6024
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03390g12008.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.1e-161461148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              rgrWT+eEde+l ++++  G g+W++ ++  g+ R++k+c++rw +yl
  Niben101Scf03390g12008.1 14 RGRWTEEEDEILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                              8*******************************99************97 PP

2Myb_DNA-binding38.52.7e-1267110146
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               rg+ T+ E+ +++++   lG++ W++I ++++ gRt++++k++w++
  Niben101Scf03390g12008.1  67 RGNITAAEEAIIIKLRSTLGNR-WSLIVEYLP-GRTDNEIKNYWNS 110
                               7899******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.3E-22564IPR009057Homeodomain-like
PROSITE profilePS5129422.119965IPR017930Myb domain
SuperFamilySSF466893.11E-2711108IPR009057Homeodomain-like
SMARTSM007179.4E-131363IPR001005SANT/Myb domain
PfamPF002491.5E-141461IPR001005SANT/Myb domain
CDDcd001673.24E-81661No hitNo description
Gene3DG3DSA:1.10.10.602.1E-2165116IPR009057Homeodomain-like
PROSITE profilePS5129417.866116IPR017930Myb domain
SMARTSM007173.8E-1366114IPR001005SANT/Myb domain
PfamPF002499.1E-1167110IPR001005SANT/Myb domain
CDDcd001671.63E-771112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MGRTPCCDKV GLKRGRWTEE EDEILTKYIQ ANGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LKTDLKRGNI TAAEEAIIIK LRSTLGNRWS LIVEYLPGRT DNEIKNYWNS RLSRKVESLR  120
IPSDEKLPQA VVELAKKGTQ QLKKQRRRRT SPSSKSIASN LSKTDESVTE LEFSSNKNVV  180
PMSSTPNIEK EASSSTINIT TSLWQEYENN IIPSGNNAIE LDNDQMQWRD DIVLIDEHEE  240
LDQDFMLSCL WNCEGEKLEI VDNNNNNNNN NEEVLTEEGG HDKIIVSDER KTLMGDWEYL  300
WASHEEVEEE NNMSNNNYVS SWPLWDSNDT AGLQQYCTNK AIVEIDPMQN EDHQHSDLVA  360
WLLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-221211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019242894.10.0PREDICTED: myb-related protein Myb4-like
TrEMBLA0A1J6J2L60.0A0A1J6J2L6_NICAT; Transcription factor myb12
STRINGXP_009790561.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.12e-67myb domain protein 111