PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf03390g12008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 364aa MW: 41841.5 Da PI: 4.6024 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.5 | 1.1e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgrWT+eEde+l ++++ G g+W++ ++ g+ R++k+c++rw +yl Niben101Scf03390g12008.1 14 RGRWTEEEDEILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61 8*******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 38.5 | 2.7e-12 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+ E+ +++++ lG++ W++I ++++ gRt++++k++w++ Niben101Scf03390g12008.1 67 RGNITAAEEAIIIKLRSTLGNR-WSLIVEYLP-GRTDNEIKNYWNS 110 7899******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.3E-22 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.119 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.11E-27 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.4E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.24E-8 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-21 | 65 | 116 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.8 | 66 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 3.8E-13 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.1E-11 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.63E-7 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MGRTPCCDKV GLKRGRWTEE EDEILTKYIQ ANGEGSWRSL PKNAGLLRCG KSCRLRWINY 60 LKTDLKRGNI TAAEEAIIIK LRSTLGNRWS LIVEYLPGRT DNEIKNYWNS RLSRKVESLR 120 IPSDEKLPQA VVELAKKGTQ QLKKQRRRRT SPSSKSIASN LSKTDESVTE LEFSSNKNVV 180 PMSSTPNIEK EASSSTINIT TSLWQEYENN IIPSGNNAIE LDNDQMQWRD DIVLIDEHEE 240 LDQDFMLSCL WNCEGEKLEI VDNNNNNNNN NEEVLTEEGG HDKIIVSDER KTLMGDWEYL 300 WASHEEVEEE NNMSNNNYVS SWPLWDSNDT AGLQQYCTNK AIVEIDPMQN EDHQHSDLVA 360 WLLS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-22 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019242894.1 | 0.0 | PREDICTED: myb-related protein Myb4-like | ||||
TrEMBL | A0A1J6J2L6 | 0.0 | A0A1J6J2L6_NICAT; Transcription factor myb12 | ||||
STRING | XP_009790561.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49330.1 | 2e-67 | myb domain protein 111 |