PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf03385g06008.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HB-PHD

Protein Properties

Length: 754aa MW: 83438.5 Da PI: 5.9021

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf03385g06008.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	41.8	1.9e-13	576	626	5	55
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 t+ + +++L e F++n+yp+++++e+L k+lgLt qV+ WF N R + Niben101Scf03385g06008.1 576 KTYGEGAIKRLYESFKENQYPDRDAKEKLGKELGLTAHQVSKWFENARHCH 626 566777899**************************************9755 PP
2	PHD	38	3.9e-13	224	279	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ Cg+ ++++++lCdg C++ fH+ Cl+++l +e++p + wlC+ C++k Niben101Scf03385g06008.1 224 FCAKCGAkdLPADNDIILCDGaCERGFHQLCLEPPLLKEDIPPDdeGWLCPGCDCK 279 69999966566*****66***************99999*****985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57903	2.44E-13	215	282	IPR011011	Zinc finger, FYVE/PHD-type
Gene3D	G3DSA:3.30.40.10	1.1E-12	221	279	IPR013083	Zinc finger, RING/FYVE/PHD-type
PROSITE profile	PS50016	10.95	222	279	IPR019787	Zinc finger, PHD-finger
Pfam	PF00628	1.2E-10	224	279	IPR019787	Zinc finger, PHD-finger
SMART	SM00249	3.6E-9	224	277	IPR001965	Zinc finger, PHD-type
CDD	cd15504	2.81E-25	224	276	No hit	No description
PROSITE pattern	PS01359	0	225	276	IPR019786	Zinc finger, PHD-type, conserved site
PROSITE profile	PS50071	13.783	569	629	IPR001356	Homeobox domain
SuperFamily	SSF46689	7.7E-13	570	634	IPR009057	Homeodomain-like
SMART	SM00389	2.8E-12	572	633	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.2E-13	574	623	IPR009057	Homeodomain-like
CDD	cd00086	3.30E-11	574	630	No hit	No description
Pfam	PF00046	5.8E-11	576	627	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 754 aa Download sequence Send to blast
MRPQLEDQTE MSTLGNTAVS PGKVARTTAR SHNTASAGKM SENSGVEQLG DACGNAGQNL 60 NLSECQEKTP GQPRKRKSTS GTPISSTRLL RSKSKEKSGA SEANNTVVTH EASEEKKRKR 120 RKKKHSKHIA VNEFTSIRGH LRYLLQRIKY EQTLIEAYSG EGWKGQSLEK IKLEKELERA 180 KAHIFRYKLK IRDLFQRVDT VLTQGRLPES LFDNEGEIDS EDIFCAKCGA KDLPADNDII 240 LCDGACERGF HQLCLEPPLL KEDIPPDDEG WLCPGCDCKV DCIDLLNDLQ GTNLSITDSW 300 EKVYPKEAAA AASGEKLDDI SGLPSDDSED DDYNPENPDV EKNDSGDESS SDESDFFSAS 360 EDLEEVPPKD GELLGLPSED SEDDDYSPDD PDKDEPVKTE SSSSDFTSDS EDLGLIVDTN 420 RLPGDKLGVS SLVDNSKHSS ASQEEKPKGV RAKRNSLNNE LSDLMLSHSP LVSCKRHIER 480 LDYKKLHDIY LCVKETYGNE SSDSSDEDFE GDPLPKARDI KSAKAAMTSP CSTPADGKYQ 540 RGKQKVSRHT SDRGLCKKLK IGGMDTPEPH SSGKKKTYGE GAIKRLYESF KENQYPDRDA 600 KEKLGKELGL TAHQVSKWFE NARHCHRHSS RWDSIMSQKV LKESPSSPNV MGEPLGTESK 660 STINNVLCNG VGKMERPKQC LNGEKCHAID KSEGDLLIQE ASGKKSRKPK AKNDITGRGL 720 DDTPTNKTSK KQNTQVNSPN SQNVRRSSRL QKQG

Sequence ? help Back to Top

Protein Sequence Length: 754 aa Download sequence Send to blast

MRPQLEDQTE MSTLGNTAVS PGKVARTTAR SHNTASAGKM SENSGVEQLG DACGNAGQNL  60
NLSECQEKTP GQPRKRKSTS GTPISSTRLL RSKSKEKSGA SEANNTVVTH EASEEKKRKR  120
RKKKHSKHIA VNEFTSIRGH LRYLLQRIKY EQTLIEAYSG EGWKGQSLEK IKLEKELERA  180
KAHIFRYKLK IRDLFQRVDT VLTQGRLPES LFDNEGEIDS EDIFCAKCGA KDLPADNDII  240
LCDGACERGF HQLCLEPPLL KEDIPPDDEG WLCPGCDCKV DCIDLLNDLQ GTNLSITDSW  300
EKVYPKEAAA AASGEKLDDI SGLPSDDSED DDYNPENPDV EKNDSGDESS SDESDFFSAS  360
EDLEEVPPKD GELLGLPSED SEDDDYSPDD PDKDEPVKTE SSSSDFTSDS EDLGLIVDTN  420
RLPGDKLGVS SLVDNSKHSS ASQEEKPKGV RAKRNSLNNE LSDLMLSHSP LVSCKRHIER  480
LDYKKLHDIY LCVKETYGNE SSDSSDEDFE GDPLPKARDI KSAKAAMTSP CSTPADGKYQ  540
RGKQKVSRHT SDRGLCKKLK IGGMDTPEPH SSGKKKTYGE GAIKRLYESF KENQYPDRDA  600
KEKLGKELGL TAHQVSKWFE NARHCHRHSS RWDSIMSQKV LKESPSSPNV MGEPLGTESK  660
STINNVLCNG VGKMERPKQC LNGEKCHAID KSEGDLLIQE ASGKKSRKPK AKNDITGRGL  720
DDTPTNKTSK KQNTQVNSPN SQNVRRSSRL QKQG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	115	120	KKRKRR
2	115	122	KKRKRRKK
3	115	123	KKRKRRKKK
4	116	121	KRKRRK
5	117	123	RKRRKKK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019256173.1	0.0	PREDICTED: pathogenesis-related homeodomain protein
TrEMBL	A0A1J6HYF9	0.0	A0A1J6HYF9_NICAT; Homeobox protein hat3.1
STRING	XP_009775281.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7220	21	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	1e-81	Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain