PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03351g02003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 345aa    MW: 40431.2 Da    PI: 5.6457
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03351g02003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.31.5e-07155196347
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                               +WT+eE e   + +k+lG++ Wk  a ++g  + + ++k+ w+ +
  Niben101Scf03351g02003.1 155 KWTEEEYEMVRKFHKELGNN-WKVLADELG--KHRFHVKDTWRRL 196
                               8*****************99.********9..6788899888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.6E-4106169IPR009057Homeodomain-like
SMARTSM007170.21152199IPR001005SANT/Myb domain
SuperFamilySSF466892.02E-7154212IPR009057Homeodomain-like
PROSITE profilePS500907.12155197IPR017877Myb-like domain
PfamPF139216.0E-9156214No hitNo description
Gene3DG3DSA:1.10.10.601.6E-6170208IPR009057Homeodomain-like
PROSITE profilePS500907.143198262IPR017877Myb-like domain
SMARTSM007171.7202264IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.6E-7209262IPR009057Homeodomain-like
PROSITE profilePS500905.645264317IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MFKDGAEAAL ESVEEKKSKK LKSFRDEQER MHDIEDGQGL SQGDIVAEVN QGDISSTVEE  60
MEEQSRTDTG NIRKRKKVML GHSSEDPTHE KTEKRVSFSG DKNHETEEEN LLYEIVKEAV  120
HKYIDIHNLG EEGLQKILNS RSNPEVLFQR SETRKWTEEE YEMVRKFHKE LGNNWKVLAD  180
ELGKHRFHVK DTWRRLKLAN KKKGQWSQEG YQTLFDYLKL KLSEEKKSKH GMLWDNIAWS  240
AISDRLSTRT DATCCLKWYD QLTSPMVAEG ELADTDDYPL VDALFELDAS CIEDVDWDNL  300
LDHRPGEICR KRWNQMVLHI GQHGNRSFAE QVEVLAKRYV QNWWK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17276RKRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019230671.10.0PREDICTED: transcription termination factor 1-like
TrEMBLA0A314KJ030.0A0A314KJ03_NICAT; Uncharacterized protein
STRINGXP_009760244.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10291429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.12e-79MYB_related family protein