PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf03314g00004.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

ERF

Protein Properties

Length: 152aa MW: 17319.3 Da PI: 9.7193

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf03314g00004.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.8	4.9e-17	17	66	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r +k +g+WvAeIr+p +kr r++lg++ ++ Aa+a++ a +l+g Niben101Scf03314g00004.1 17 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSSPVAAARAYDTAVFYLRG 66 69***99.******9...336***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00380	3.5E-36	17	80	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	21.904	17	74	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	9.81E-21	17	75	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	2.0E-29	18	75	IPR001471	AP2/ERF domain
Pfam	PF00847	1.4E-10	18	66	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.9E-11	18	29	IPR001471	AP2/ERF domain
CDD	cd00018	5.19E-27	18	75	No hit	No description
PRINTS	PR00367	1.9E-11	56	76	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 152 aa Download sequence Send to blast
MMEGEKRKQR QHQQDKPYRG IRMRKWGKWV AEIREPNKRS RIWLGSYSSP VAAARAYDTA 60 VFYLRGPTAR LNFPECIVND DRELHDLSAA SIRKKATEVG ARVDALQTAA LHNNSSAGFT 120 ESNSNSNINP RRVTIKPDLN EYPSPESCDE DN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	5e-15	14	74	2	63	ATERF1
3gcc_A	5e-15	14	74	2	63	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009796242.1	1e-110	PREDICTED: ethylene-responsive transcription factor ERF010-like
Refseq	XP_016452686.1	1e-110	PREDICTED: ethylene-responsive transcription factor ERF010-like
Swissprot	Q9FH94	4e-53	ERF10_ARATH; Ethylene-responsive transcription factor ERF010
TrEMBL	A0A1S3YKB5	1e-108	A0A1S3YKB5_TOBAC; ethylene-responsive transcription factor ERF010-like
TrEMBL	A0A1U7XW50	1e-108	A0A1U7XW50_NICSY; ethylene-responsive transcription factor ERF010-like
STRING	XP_009796242.1	1e-109	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA943	23	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67190.1	2e-55	DREB and EAR motif protein 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]