PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf03310g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 212aa MW: 23503.2 Da PI: 9.2965 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.1 | 6.1e-20 | 135 | 185 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp+ +g +r++lg+f ta eAaka+++a+ k++g Niben101Scf03310g00003.1 135 HYRGVRQRP-WGKYAAEIRDPTRRG--ARVWLGTFHTAIEAAKAYDRAAFKMRG 185 7********.**********97665..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 3.3E-32 | 134 | 194 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.68E-31 | 135 | 193 | No hit | No description |
SMART | SM00380 | 1.0E-36 | 135 | 199 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.4E-13 | 135 | 185 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.31E-22 | 135 | 195 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.709 | 135 | 193 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.9E-14 | 136 | 147 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.9E-14 | 175 | 195 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MTESSSSQSE SASSDSLPFY FLSNSFDFEA DFFQFGNEVS NSSSESANSV HNSTSFIKLK 60 TEPTISSSEI EKSQVIIDLT SPKLSNVGDW KPSLKIDLPP VKKFEWIGFG NSTTLSTSIV 120 SVTMQQKVKT EEKRHYRGVR QRPWGKYAAE IRDPTRRGAR VWLGTFHTAI EAAKAYDRAA 180 FKMRGSKAIL NFPLEVGKNL SYSSSSVDGG ET |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-32 | 134 | 196 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009609421.1 | 1e-124 | PREDICTED: ethylene-responsive transcription factor 5-like | ||||
Swissprot | O80341 | 7e-43 | EF102_ARATH; Ethylene-responsive transcription factor 5 | ||||
TrEMBL | A0A1S4AWP9 | 1e-122 | A0A1S4AWP9_TOBAC; ethylene-responsive transcription factor 5-like | ||||
STRING | XP_009609421.1 | 1e-124 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA963 | 23 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47230.1 | 1e-42 | ethylene responsive element binding factor 5 |
Publications ? help Back to Top | |||
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