PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf03307g05001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 425aa MW: 47824.1 Da PI: 7.2845

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf03307g05001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	92.3	7.9e-29	49	178	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk..... 79 lp+G++F+Ptd+el+ e+L++kv +kk + ++ i+e + P ++ v+ + + +fF++ +k+y+tg+rk+r+++ Niben101Scf03307g05001.1 49 LPAGVKFDPTDQELI-EHLEAKVVSKKESKSHPlIDE-----FIPT-IE-GVTRDGLSRHFFHRPSKAYTTGTRKRRKIQtecdl 125 799***********.99999998886554442444.....3443.32.333455678****************73334555 PP NAM 80 ...sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l Niben101Scf03307g05001.1 126 qggETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 178 544778********.999*******5547999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51257	5	1	15	No hit	No description
SuperFamily	SSF101941	7.45E-34	45	197	IPR003441	NAC domain
PROSITE profile	PS51005	28.041	49	197	IPR003441	NAC domain
Pfam	PF02365	3.6E-16	50	178	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence Send to blast
MNKSSSHQLG SISSCDLIDA KLEEHQLCGS KQCPGCGQKL EGKPDWVGLP AGVKFDPTDQ 60 ELIEHLEAKV VSKKESKSHP LIDEFIPTIE GVTRDGLSRH FFHRPSKAYT TGTRKRRKIQ 120 TECDLQGGET RWHKTGKTRP VMVNGKQKGC KKILVLYTNF GKNRKPEKTN WVMHQYHLGQ 180 NEEEREGELV VSKIFYQTQP RQCNTSTTWS NNERSINNTG DHSGSGSCSS KEMNNINPNS 240 HSHRDEFSVS VGAAMSSNYN TVNVRQLKAD HFSCLPFRSN FDEAGITDQA AGTCEEPESQ 300 RQHPPHHVTH ESSHNHQNQI ATSAAFSISR PSPPISAIIA PPPPLHHTSV ILDQDSFHVP 360 RNYNLQQQQH HKVLVRRSVS GLEELIMGCT STDIKEESSL TNPQEADWLK YSSFWTDPEN 420 TDHHE

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence Send to blast

MNKSSSHQLG SISSCDLIDA KLEEHQLCGS KQCPGCGQKL EGKPDWVGLP AGVKFDPTDQ  60
ELIEHLEAKV VSKKESKSHP LIDEFIPTIE GVTRDGLSRH FFHRPSKAYT TGTRKRRKIQ  120
TECDLQGGET RWHKTGKTRP VMVNGKQKGC KKILVLYTNF GKNRKPEKTN WVMHQYHLGQ  180
NEEEREGELV VSKIFYQTQP RQCNTSTTWS NNERSINNTG DHSGSGSCSS KEMNNINPNS  240
HSHRDEFSVS VGAAMSSNYN TVNVRQLKAD HFSCLPFRSN FDEAGITDQA AGTCEEPESQ  300
RQHPPHHVTH ESSHNHQNQI ATSAAFSISR PSPPISAIIA PPPPLHHTSV ILDQDSFHVP  360
RNYNLQQQQH HKVLVRRSVS GLEELIMGCT STDIKEESSL TNPQEADWLK YSSFWTDPEN  420
TDHHE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019252561.1	0.0	PREDICTED: NAC domain-containing protein 73-like
Refseq	XP_019252562.1	0.0	PREDICTED: NAC domain-containing protein 73-like
Swissprot	Q9M0F8	1e-152	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	A0A1J6I5N1	0.0	A0A1J6I5N1_NICAT; Nac domain-containing protein 73
STRING	XP_009595150.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4057	24	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	1e-138	NAC domain containing protein 75

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]