PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03300g02006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 398aa    MW: 44301.4 Da    PI: 8.015
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03300g02006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like104.94.7e-33257312156
                   G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                               k+r++W+peLH+rFv+a++qLGGs++AtPk+i+elm+v+gLt+++vkSHLQkYRl+
  Niben101Scf03300g02006.1 257 KQRRCWSPELHRRFVDALQQLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLH 312
                               79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.001254314IPR017930Myb domain
SuperFamilySSF466892.87E-18255315IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.7E-30256316IPR009057Homeodomain-like
TIGRFAMsTIGR015575.3E-27257312IPR006447Myb domain, plants
PfamPF002494.9E-8259310IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MGSIPPELSL DCRPTFIPTS VTDFLKQLSS IHNLPDKLAQ IDDYISRLED EMRKIDAFKR  60
ELPLSVLLVK DAIVALRAES VQCRKSRTEP VLEEFIPLKM SSNEDNKAEV TKDKDSSREK  120
MSWMSSVQLW NNDQNTDEAF NKQQSKSELK IRSPEEGNSP VTEDRFQSCK TLNIGKAFSP  180
FKGYSGFSVT TVRKDDEDEL PGVPGLSLHT PGIIKLREDT SGLNSKHNGS RGGLSSVASS  240
QTNIRNGSLS QQQAVRKQRR CWSPELHRRF VDALQQLGGS QVATPKQIRE LMQVDGLTND  300
EVKSHLQKYR LHTRRIPNTQ TQPANQSGAA LWMSQDQYGG SSKQSSSQSG SPQGPLHLSG  360
SSRGTSTTVG DSMEEEDDVK SESRSWKNHA HMSGKIDV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A6e-14257310255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B6e-14257310255Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A5e-14257310154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-14257310154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-14257310154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-14257310154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A6e-14257310255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C6e-14257310255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D6e-14257310255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F6e-14257310255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H6e-14257310255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J6e-14257310255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009625720.10.0PREDICTED: myb family transcription factor EFM-like
TrEMBLA0A1J6ISH60.0A0A1J6ISH6_NICAT; Myb family transcription factor efm
TrEMBLA0A1S3XVJ90.0A0A1S3XVJ9_TOBAC; two-component response regulator-like APRR2
TrEMBLA0A1U7WHH60.0A0A1U7WHH6_NICSY; two-component response regulator-like APRR2
STRINGXP_009625720.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43612443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.14e-54G2-like family protein