PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03282g02005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LSD
Protein Properties Length: 175aa    MW: 18122 Da    PI: 8.291
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03282g02005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD140.35.1e-13730124
                   zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdt 24
                              C+gCrt+L YPrGA++V+Ca+C++
  Niben101Scf03282g02005.1  7 CSGCRTILLYPRGATNVCCAVCNA 30
                              **********************97 PP

2zf-LSD147.43.1e-154670125
                   zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                              CggCrtlL+ PrGA+sVRCa+C+tV
  Niben101Scf03282g02005.1 46 CGGCRTLLMHPRGATSVRCACCHTV 70
                              ************************9 PP

3zf-LSD142.88.7e-1484107124
                   zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdt 24 
                               Cg+Crt+L+YP GApsV+Ca+C+ 
  Niben101Scf03282g02005.1  84 CGNCRTMLMYPCGAPSVKCAICHY 107
                               **********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010536.6E-13432IPR005735Zinc finger, LSD1-type
PfamPF069433.2E-11730IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.2E-174373IPR005735Zinc finger, LSD1-type
PfamPF069432.5E-134670IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010533.7E-1481111IPR005735Zinc finger, LSD1-type
PfamPF069433.8E-1384108IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MQSQLVCSGC RTILLYPRGA TNVCCAVCNA LTPVPPPGME MAQLICGGCR TLLMHPRGAT  60
SVRCACCHTV NLVPGPNQFA HVNCGNCRTM LMYPCGAPSV KCAICHYITH VNAGEGRVHV  120
PVHTPNGGAT SSAGPTSSTA AARSQNQTVV VQNPMSLDES GKLVSNVVVG VTTTT
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009783613.11e-122PREDICTED: protein LOL2-like isoform X1
RefseqXP_016510524.11e-122PREDICTED: protein LOL2-like
SwissprotQ2QMB32e-67LOL2_ORYSJ; Protein LOL2
TrEMBLA0A1S4DBD81e-120A0A1S4DBD8_TOBAC; protein LOL2-like
TrEMBLA0A1U7WYC91e-120A0A1U7WYC9_NICSY; protein LOL2-like isoform X1
STRINGXP_009783613.11e-121(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16792467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.72e-55LSD family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Wu J, et al.
    OsLOL1, a C2C2-type zinc finger protein, interacts with OsbZIP58 to promote seed germination through the modulation of gibberellin biosynthesis in Oryza sativa.
    Plant J., 2014. 80(6): p. 1118-30
    [PMID:25353370]