PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03273g01001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 201aa    MW: 23032.8 Da    PI: 8.4539
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03273g01001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF74.39.5e-24957149
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                              krien   rqvtf+kRr+g+lKKA+ELSvLCdae+ + ifs +gk ye 
  Niben101Scf03273g01001.1  9 KRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLFIFSAHGKRYEL 57
                              79*******************************************9985 PP
2K-box56.11.6e-19831749100
                     K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 
                               ++++++   + e++ Lk eie Lqr +  + G + ++++l eL++Le+ Le  + +iRs K+++++++i+ l++ke  lq +nk+
  Niben101Scf03273g01001.1  83 ANDKQTLDPKGEINMLKHEIEVLQRGLSYMYGGGAGTMTLDELHSLEKYLELWMFHIRSAKMDIMFQEIQLLKNKEGILQAANKY 167
                               45666667788************************************************************************** PP

                     K-box  94 Lrkklee 100
                               L+ k+ee
  Niben101Scf03273g01001.1 168 LQDKIEE 174
                               ****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.4E-34160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.16E-26173IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.072161IPR002100Transcription factor, MADS-box
CDDcd002659.05E-38278No hitNo description
PRINTSPR004044.3E-26323IPR002100Transcription factor, MADS-box
PfamPF003194.2E-211055IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.74888178IPR002487Transcription factor, K-box
PfamPF014864.0E-2189172IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MARGKVQMKR IENPVHRQVT FCKRRAGLLK KAKELSVLCD AEIGLFIFSA HGKRYELATK  60
GTMQGLIEKY LKSTRGAEVA EEANDKQTLD PKGEINMLKH EIEVLQRGLS YMYGGGAGTM  120
TLDELHSLEK YLELWMFHIR SAKMDIMFQE IQLLKNKEGI LQAANKYLQD KIEEQCPVTN  180
MTSTLTDFQL PLTVQNEIFQ F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-14193192Myocyte-specific enhancer factor 2B
1tqe_Q1e-14193192Myocyte-specific enhancer factor 2B
1tqe_R1e-14193192Myocyte-specific enhancer factor 2B
1tqe_S1e-14193192Myocyte-specific enhancer factor 2B
5f28_A9e-15187192MEF2C
5f28_B9e-15187192MEF2C
5f28_C9e-15187192MEF2C
5f28_D9e-15187192MEF2C
6c9l_A1e-14193192Myocyte-specific enhancer factor 2B
6c9l_B1e-14193192Myocyte-specific enhancer factor 2B
6c9l_C1e-14193192Myocyte-specific enhancer factor 2B
6c9l_D1e-14193192Myocyte-specific enhancer factor 2B
6c9l_E1e-14193192Myocyte-specific enhancer factor 2B
6c9l_F1e-14193192Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that regulates root development by controlling cell proliferation in root meristem. May mediate responses to auxin in the root. May act as promoter of the flowering transition through up-regulation of SOC, FT and LFY. {ECO:0000269|PubMed:18203871}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin in root phloem. {ECO:0000269|PubMed:18203871}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001312055.11e-145agamous-like MADS-box protein AGL12
RefseqXP_009770171.11e-145PREDICTED: agamous-like MADS-box protein AGL12
SwissprotQ388414e-81AGL12_ARATH; Agamous-like MADS-box protein AGL12
TrEMBLA0A097BTX71e-143A0A097BTX7_TOBAC; TAGL12 transcription factor
TrEMBLA0A1U7VYX61e-143A0A1U7VYX6_NICSY; agamous-like MADS-box protein AGL12
STRINGXP_009770171.11e-144(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA98102024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.12e-83AGAMOUS-like 12
Publications ? help Back to Top
  1. Zimmermann P,Hirsch-Hoffmann M,Hennig L,Gruissem W
    GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox.
    Plant Physiol., 2004. 136(1): p. 2621-32
    [PMID:15375207]
  2. Pacheco-Escobedo MA, et al.
    Longitudinal zonation pattern in Arabidopsis root tip defined by a multiple structural change algorithm.
    Ann. Bot., 2018.
    [PMID:27358290]
  3. García-Cruz KV, et al.
    The MADS-box XAANTAL1 increases proliferation at the Arabidopsis root stem-cell niche and participates in transition to differentiation by regulating cell-cycle components.
    Ann. Bot., 2018.
    [PMID:27474508]