PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf03255g03008.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Trihelix

Protein Properties

Length: 403aa MW: 46218.9 Da PI: 5.1319

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf03255g03008.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	72.9	5.7e-23	293	376	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 rW+k+ev++L+ +r +++++ +g +k+ Weev++ ++++g+ r+pk+Ckekwen+nk+yk++ ++ k ++ ++cpyf++l Niben101Scf03255g03008.1 293 RWPKSEVQDLVSIRIALDHKFFNG-AKGSVWEEVADGLAKKGYIRTPKKCKEKWENINKYYKRTIDSGKAC-LRNYRSCPYFREL 375 8******************999.99*************************************997.456679***99 PP trihelix 86 e 86 + Niben101Scf03255g03008.1 376 D 376 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.015	286	349	IPR017877	Myb-like domain
CDD	cd12203	2.35E-19	292	355	No hit	No description
Pfam	PF13837	5.8E-18	292	376	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence Send to blast
MELLTDFDGH RSNDVTTFPD NNLTPFPVST NAVYSHPASV VPPPPEIDHL PVSPARKLRP 60 VRCGNGRTYV DMVDFICDMD ETLMNCSSDL GGFFSRFSAQ NANTVIPREC GFEFSAVQQM 120 KSVFDADCFN LISQARVLEA EFSSSSDDSE SSETIEERLN RKRETRKSLK LYLEDVVKRL 180 MDKQEQMHKQ LIEMIEKKEH ARIIREEGWK QQEIERAKRD EEVRAEETSR NMALISFLEN 240 MLGDEFQIPE SSEMSSRVKD EGEVHGQEAD VKSDPCEVHG QEADVKSDPC NRRWPKSEVQ 300 DLVSIRIALD HKFFNGAKGS VWEEVADGLA KKGYIRTPKK CKEKWENINK YYKRTIDSGK 360 ACLRNYRSCP YFRELDILYK SHLLTQGTGD CVKSEAESKK VEE

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence Send to blast

MELLTDFDGH RSNDVTTFPD NNLTPFPVST NAVYSHPASV VPPPPEIDHL PVSPARKLRP  60
VRCGNGRTYV DMVDFICDMD ETLMNCSSDL GGFFSRFSAQ NANTVIPREC GFEFSAVQQM  120
KSVFDADCFN LISQARVLEA EFSSSSDDSE SSETIEERLN RKRETRKSLK LYLEDVVKRL  180
MDKQEQMHKQ LIEMIEKKEH ARIIREEGWK QQEIERAKRD EEVRAEETSR NMALISFLEN  240
MLGDEFQIPE SSEMSSRVKD EGEVHGQEAD VKSDPCEVHG QEADVKSDPC NRRWPKSEVQ  300
DLVSIRIALD HKFFNGAKGS VWEEVADGLA KKGYIRTPKK CKEKWENINK YYKRTIDSGK  360
ACLRNYRSCP YFRELDILYK SHLLTQGTGD CVKSEAESKK VEE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009771160.1	0.0	PREDICTED: trihelix transcription factor GT-2
TrEMBL	A0A1U7WAA5	0.0	A0A1U7WAA5_NICSY; trihelix transcription factor GT-2
STRING	XP_009771160.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12884	16	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47660.1	1e-48	Trihelix family protein