PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03245g07014.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARR-B
Protein Properties Length: 544aa    MW: 60097.2 Da    PI: 5.6094
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03245g07014.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like734.4e-23166218154
                   G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 
                               k++++Wt+ LH++F+ea++ + G +kA+Pk+il+ mkv+gLt+++v+SHLQkY 
  Niben101Scf03245g07014.1 166 KAKVVWTSSLHNKFLEAIRDI-GFDKAVPKKILDQMKVPGLTRANVASHLQKYH 218
                               6799*****************.*******************************6 PP
2Response_reg49.52.3e-1738429109
                               ESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
              Response_reg  29 addgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                               ++++ +al +l+ k   +Dl+++D+ mp+m+G+el + i+ e  +lp+++++a ++e ++l+ l+ Ga  fl+Kp++ ++l++
  Niben101Scf03245g07014.1   3 VKHPMDALSILRIKGgsFDLVVIDVHMPDMNGFELQQVITDEF-ELPVVLMSADDKEGTILKGLDGGAAFFLVKPISVDDLRD 84 
                               56677788877544445**********************9999.9***********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011027.57190IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23007.5E-21297No hitNo description
SuperFamilySSF521729.53E-20390IPR011006CheY-like superfamily
PfamPF000721.4E-13684IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.38E-161290No hitNo description
PROSITE profilePS512949.107163222IPR017930Myb domain
SuperFamilySSF466891.33E-16164223IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.3E-23165223IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-22166219IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MTVKHPMDAL SILRIKGGSF DLVVIDVHMP DMNGFELQQV ITDEFELPVV LMSADDKEGT  60
ILKGLDGGAA FFLVKPISVD DLRDLWQYVL LQKKKGKRVV LEEIDCLEKS SNCNKKSLHE  120
VRESASSINE NCYQHIKKEK SKRKPARTQR NADKDNSGNS AAPFKKAKVV WTSSLHNKFL  180
EAIRDIGFDK AVPKKILDQM KVPGLTRANV ASHLQKYHIF LERVSDACCR IQAADTSLAI  240
KAVQSTITSG MLGQEKFGLQ KQFTENTNNP RSSIHTANNG SSSFRNQQTR QTIPSGYEQA  300
QSFLNEGNLC NITHSNENPL CKANQLTSTM KANNYQTGSS ACEDISSQLM NGTTSTQVRR  360
MLSGVPANRL SDRNLLALGT NGITKHATLN GNLNFLRDGF ADDQCGTNFT QNNDADEAST  420
LFAGGVNFIG KSQHDSEQCL AQEASASVGF DGEKQCSAIL SDHIDEETYM QLPSFVNDVC  480
RGQEVDATLN PQQDHIGHTE PAEDGMSQLH NIFSYPTEQC KDEEFLELML ASSPYEDDQN  540
PDGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-17165225464ARR10-B
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009771679.10.0PREDICTED: putative two-component response regulator ARR21 isoform X2
TrEMBLA0A1U7WAJ50.0A0A1U7WAJ5_NICSY; putative two-component response regulator ARR21 isoform X2
STRINGXP_009771678.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32902038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.13e-49response regulator 2