PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf03236g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ZF-HD | ||||||||
Protein Properties | Length: 325aa MW: 36299.9 Da PI: 9.9337 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 111.9 | 3.2e-35 | 67 | 124 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 v YkeClkNhAaslGghavDGCgEfmps++++ +++++lkCaACgCHRnFHRre+ee Niben101Scf03236g00004.1 67 VVIYKECLKNHAASLGGHAVDGCGEFMPSPTANpADPTSLKCAACGCHRNFHRREPEE 124 589******************************9*********************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 2.1E-29 | 68 | 122 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.0E-31 | 70 | 121 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 7.0E-23 | 70 | 120 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.243 | 70 | 121 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.99E-18 | 206 | 274 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.1E-28 | 208 | 274 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.9E-26 | 213 | 269 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MDLTNNTSTT TIPTLPNTTT ITTTSAHIKN PEAEIETPTQ IQKPKPFSFS NGVLKRKNLF 60 QHHHPVVVIY KECLKNHAAS LGGHAVDGCG EFMPSPTANP ADPTSLKCAA CGCHRNFHRR 120 EPEEPVVIPP PPIATAALEY QPHHRHHPPP PPPPLPRGDH SSPNSPSPPP ISSAYYPASA 180 PHKLLALSAG FSGEKNHNPI SSPVANTFNS NGRKRFRTKF TPDQKVKMLE FAERVGWKMQ 240 KRDEDLVRSF CNEIGVEKGV LKVWMHNNKI TFGKKLDQHQ LADININNNG NSTNVVNGFC 300 IVSRXHFWEE IRSTPPRRHQ HQQKW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 4e-20 | 214 | 269 | 18 | 73 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009787877.1 | 1e-152 | PREDICTED: zinc-finger homeodomain protein 9-like | ||||
Refseq | XP_016507066.1 | 1e-152 | PREDICTED: zinc-finger homeodomain protein 9-like | ||||
Swissprot | Q9LHF0 | 5e-70 | ZHD9_ARATH; Zinc-finger homeodomain protein 9 | ||||
TrEMBL | A0A1S4D0Z9 | 1e-151 | A0A1S4D0Z9_TOBAC; zinc-finger homeodomain protein 9-like | ||||
TrEMBL | A0A1U7X6Z9 | 1e-151 | A0A1U7X6Z9_NICSY; zinc-finger homeodomain protein 9-like | ||||
STRING | XP_009787877.1 | 1e-151 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1088 | 24 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28920.1 | 5e-63 | homeobox protein 34 |
Publications ? help Back to Top | |||
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