PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf03223g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 139aa MW: 15802.9 Da PI: 10.1637 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.3 | 1.9e-18 | 17 | 64 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r +k +g+WvAeIr+p +kr++lg++ ++ Aa+a++ a+ l+g Niben101Scf03223g00002.1 17 PYRGIRKRK-WGKWVAEIREP-----NKRIWLGSYSSPLAAARAYDTAAFHLRG 64 69****999.**********9.....8************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 7.85E-20 | 17 | 73 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.379 | 17 | 72 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.7E-33 | 17 | 78 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-13 | 18 | 29 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.2E-11 | 18 | 64 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.42E-16 | 18 | 72 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.7E-28 | 18 | 73 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-13 | 54 | 74 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 139 aa Download sequence Send to blast |
MEGGSCCSRQ NRQQDKPYRG IRKRKWGKWV AEIREPNKRI WLGSYSSPLA AARAYDTAAF 60 HLRGPSAKLN FPQFIVNNEN HQLHNQLSAS DIRKKATQVG AKVNAMLQIA TSSTESSWLS 120 MKPDLNEYPT PETWEELAI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-16 | 14 | 79 | 2 | 70 | ATERF1 |
3gcc_A | 2e-16 | 14 | 79 | 2 | 70 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009793053.1 | 2e-90 | PREDICTED: ethylene-responsive transcription factor RAP2-1-like | ||||
Refseq | XP_016456981.1 | 2e-90 | PREDICTED: ethylene-responsive transcription factor RAP2-1-like | ||||
Swissprot | Q8LC30 | 9e-42 | RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1 | ||||
TrEMBL | A0A1S3YXC8 | 4e-89 | A0A1S3YXC8_TOBAC; ethylene-responsive transcription factor RAP2-1-like | ||||
TrEMBL | A0A1U7XQ94 | 4e-89 | A0A1U7XQ94_NICSY; ethylene-responsive transcription factor RAP2-1-like | ||||
STRING | XP_009793053.1 | 7e-90 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA943 | 23 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46768.1 | 4e-44 | related to AP2 1 |
Publications ? help Back to Top | |||
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