PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf03221g02010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 66aa MW: 7478.66 Da PI: 10.7674 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28 | 5.1e-09 | 26 | 61 | 1 | 38 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlk 38 +g+ T+eE+ l + + + +G++ Wk+I +++ gRt+k Niben101Scf03221g02010.1 26 KGSLTPEEQNLAISLQANYGNK-WKKIGAEVS-GRTAK 61 6788******************.*********.***98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.1E-4 | 6 | 20 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.4E-14 | 6 | 61 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.024 | 21 | 66 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-13 | 21 | 62 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.8E-7 | 26 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 0.00119 | 30 | 61 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 66 aa Download sequence Send to blast |
MGKTLDRDSK SCLERWKNYL KPGIKKGSLT PEEQNLAISL QANYGNKWKK IGAEVSGRTA 60 KRLGKW |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for normal cell differentiation. Interacts directly with asymmetric leaves 2 (AS2) to repress the knox homeobox genes. {ECO:0000269|PubMed:10102816, ECO:0000269|PubMed:12750468, ECO:0000269|PubMed:9655808}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009784773.1 | 2e-35 | PREDICTED: protein rough sheath 2 homolog | ||||
Refseq | XP_016442099.1 | 2e-35 | PREDICTED: protein rough sheath 2 homolog | ||||
Refseq | XP_019262167.1 | 2e-35 | PREDICTED: transcription factor AS1-like | ||||
Swissprot | Q9S7B2 | 2e-30 | RS2_MAIZE; Protein rough sheath 2 | ||||
TrEMBL | A0A1S3XQD9 | 5e-34 | A0A1S3XQD9_TOBAC; protein rough sheath 2 homolog | ||||
TrEMBL | A0A1U7X1R3 | 5e-34 | A0A1U7X1R3_NICSY; protein rough sheath 2 homolog | ||||
TrEMBL | A0A314LB43 | 5e-34 | A0A314LB43_NICAT; Transcription factor as1 | ||||
STRING | XP_009784773.1 | 9e-35 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2933 | 24 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37630.1 | 3e-32 | MYB family protein |