PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf03214g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 88aa MW: 9861.15 Da PI: 7.4384 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.3 | 9.5e-10 | 11 | 55 | 2 | 44 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 g+WT+ + + +a + + ++ +W+ +a+ +g g+t++++k ++ Niben101Scf03214g00003.1 11 GSWTAKQNKAFEKALAVYDKDtcdRWSNVAKAVG-GKTAEEVKQHY 55 89********************************.**********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-5 | 6 | 56 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 9.962 | 8 | 68 | IPR017884 | SANT domain |
SMART | SM00717 | 9.3E-9 | 9 | 61 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-7 | 11 | 55 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.06E-13 | 11 | 67 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.58E-7 | 12 | 55 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 88 aa Download sequence Send to blast |
MSSMSSQHGS GSWTAKQNKA FEKALAVYDK DTCDRWSNVA KAVGGKTAEE VKQHYEILVH 60 DVLYIENECP SPNTRLLLEN NFIKGCKI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 4e-30 | 4 | 75 | 1 | 74 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269|PubMed:15790677}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269|PubMed:15790677, ECO:0000269|PubMed:16236768}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009618694.1 | 1e-42 | PREDICTED: protein RADIALIS-like 2 | ||||
Swissprot | Q58FS3 | 6e-30 | RAD_ANTMA; Transcription factor RADIALIS | ||||
TrEMBL | A0A1S4AR87 | 9e-40 | A0A1S4AR87_TOBAC; protein RADIALIS-like 1 | ||||
TrEMBL | A0A314LA05 | 1e-39 | A0A314LA05_NICAT; Protein radialis-like 2 | ||||
STRING | XP_009618694.1 | 4e-42 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA202 | 24 | 231 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 4e-28 | RAD-like 1 |
Publications ? help Back to Top | |||
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