PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03203g04003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 667aa    MW: 74004.4 Da    PI: 8.207
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03203g04003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.52.6e-07558607147
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                               r +++  E e lv+av+qlG+g+W+ +  +      +Rt  ++k++w ++
  Niben101Scf03203g04003.1 558 RRPFSVAEVEALVEAVEQLGTGRWRDVKMRAFdnaDHRTYVDLKDKWKTL 607
                               6789999*******************9766668**9***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.10.20.902.9E-4352434No hitNo description
SuperFamilySSF542365.18E-8359445IPR029071Ubiquitin-related domain
PROSITE profilePS5005310.266364434IPR000626Ubiquitin domain
PROSITE profilePS5129416.721553612IPR017930Myb domain
SMARTSM007179.1E-8557610IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-10558608IPR009057Homeodomain-like
SuperFamilySSF466898.97E-16559640IPR009057Homeodomain-like
CDDcd116604.27E-17559609No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    Send to blast
MVSKKRLNCG FSGYQIPFIP KAPRSARKRR PCNKLDDDQI CAFDLLAAAA GKLLLESESS  60
ASSNAGAPAG KYELADCRDS IKHEQVEDDK AVRSECLDQG SCVESAYIPE VAEQEQTFKN  120
GLSKPFAENK SFLEHTPTII GSNSLLKDWS YVKLESCKEV SADAQLQTNV EGGSPDLADP  180
FDIRIVEGTR KQLDDDSKQI TVVNTCRIKA PIEKNVNSSV LVNSDSSIQL PLYRDPVPFA  240
SFVKSRNNVK LGITYRRIRK MLTSRHWKVA PKLKDCERSY SNDGLKSFYC NRKSKRGNER  300
CQFEIPSKRS KLYDHGFAVV YDQEASSESI PNSHEKGIKG DTSIPPKGAG ASASDRNHQK  360
DPNVKFSIKS FKVPELYIEV PETETVGSLK RTVMEAVTAI LGSGLRVGVV LQGKKVRDDN  420
RTLQQAGISP NDNLDTLGFT LEPSFSKVPL SSSPKDDTLA SASYMTDREL SRHPSSPISE  480
LGPPNALSDP PEARLDKHDE SNHELEMSPT TPIDQSADEA FPDFKALAIV PPVNKEALAV  540
VPVNHKNRRS ELSQRRTRRP FSVAEVEALV EAVEQLGTGR WRDVKMRAFD NADHRTYVDL  600
KDKWKTLVHT ASIAPQQRRG EPVPQELLDR VLAAHSYWSQ HQAKQHAKQH AEPLKIVDAQ  660
VQNGIAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A1e-665426631118Telomere binding protein TBP1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009785792.10.0PREDICTED: telomere repeat-binding protein 3-like isoform X1
TrEMBLA0A1U7X0V70.0A0A1U7X0V7_NICSY; telomere repeat-binding protein 3-like isoform X1
STRINGXP_009785792.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20931729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.14e-86TRF-like 2