PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf03203g04003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 667aa MW: 74004.4 Da PI: 8.207 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.5 | 2.6e-07 | 558 | 607 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av+qlG+g+W+ + + +Rt ++k++w ++ Niben101Scf03203g04003.1 558 RRPFSVAEVEALVEAVEQLGTGRWRDVKMRAFdnaDHRTYVDLKDKWKTL 607 6789999*******************9766668**9***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.10.20.90 | 2.9E-4 | 352 | 434 | No hit | No description |
SuperFamily | SSF54236 | 5.18E-8 | 359 | 445 | IPR029071 | Ubiquitin-related domain |
PROSITE profile | PS50053 | 10.266 | 364 | 434 | IPR000626 | Ubiquitin domain |
PROSITE profile | PS51294 | 16.721 | 553 | 612 | IPR017930 | Myb domain |
SMART | SM00717 | 9.1E-8 | 557 | 610 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.2E-10 | 558 | 608 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.97E-16 | 559 | 640 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 4.27E-17 | 559 | 609 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 667 aa Download sequence Send to blast |
MVSKKRLNCG FSGYQIPFIP KAPRSARKRR PCNKLDDDQI CAFDLLAAAA GKLLLESESS 60 ASSNAGAPAG KYELADCRDS IKHEQVEDDK AVRSECLDQG SCVESAYIPE VAEQEQTFKN 120 GLSKPFAENK SFLEHTPTII GSNSLLKDWS YVKLESCKEV SADAQLQTNV EGGSPDLADP 180 FDIRIVEGTR KQLDDDSKQI TVVNTCRIKA PIEKNVNSSV LVNSDSSIQL PLYRDPVPFA 240 SFVKSRNNVK LGITYRRIRK MLTSRHWKVA PKLKDCERSY SNDGLKSFYC NRKSKRGNER 300 CQFEIPSKRS KLYDHGFAVV YDQEASSESI PNSHEKGIKG DTSIPPKGAG ASASDRNHQK 360 DPNVKFSIKS FKVPELYIEV PETETVGSLK RTVMEAVTAI LGSGLRVGVV LQGKKVRDDN 420 RTLQQAGISP NDNLDTLGFT LEPSFSKVPL SSSPKDDTLA SASYMTDREL SRHPSSPISE 480 LGPPNALSDP PEARLDKHDE SNHELEMSPT TPIDQSADEA FPDFKALAIV PPVNKEALAV 540 VPVNHKNRRS ELSQRRTRRP FSVAEVEALV EAVEQLGTGR WRDVKMRAFD NADHRTYVDL 600 KDKWKTLVHT ASIAPQQRRG EPVPQELLDR VLAAHSYWSQ HQAKQHAKQH AEPLKIVDAQ 660 VQNGIAA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2juh_A | 1e-66 | 542 | 663 | 1 | 118 | Telomere binding protein TBP1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009785792.1 | 0.0 | PREDICTED: telomere repeat-binding protein 3-like isoform X1 | ||||
TrEMBL | A0A1U7X0V7 | 0.0 | A0A1U7X0V7_NICSY; telomere repeat-binding protein 3-like isoform X1 | ||||
STRING | XP_009785792.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2093 | 17 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07540.1 | 4e-86 | TRF-like 2 |