PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03202g13015.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 472aa    MW: 52664.9 Da    PI: 4.1705
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03202g13015.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.52.3e-2061115156
                       AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ngkrkrfslgkfgtaeeAakaaiaarkklege 56 
                               ++y+GVr++  +g+WvAeIr+ +++ ng  kr +lg+f ta eAa a+++a+k ++g+
  Niben101Scf03202g13015.1  61 CKYRGVRQRT-WGKWVAEIREpVYNsNG--KRLWLGTFSTAVEAAIAYDEAAKVMYGH 115
                               79*****999.**********7777665..***********************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.08E-3061123No hitNo description
PfamPF008472.6E-1361115IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-2962123IPR001471AP2/ERF domain
SMARTSM003801.3E-3362128IPR001471AP2/ERF domain
SuperFamilySSF541716.47E-2162123IPR016177DNA-binding domain
PROSITE profilePS5103222.37962122IPR001471AP2/ERF domain
PRINTSPR003671.9E-96374IPR001471AP2/ERF domain
PRINTSPR003671.9E-988104IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MRRRRNGSTS IEETLLMWKN QKQELNANLD GGIKKKPRKF PAKGSKKGCM RGKGGPENLG  60
CKYRGVRQRT WGKWVAEIRE PVYNSNGKRL WLGTFSTAVE AAIAYDEAAK VMYGHNAMLN  120
FPDYSVQNSE LANYSTSVSI ARTASLGSSE SSVEDSRIEP DLQIWNTPDD GVVAITDEKT  180
ILDDPTNLCS GGRADGDPGA QQDSSVCCSN TESVIIEVDD SLDDMKGLNC STRIDSEPIL  240
DPTSSCVKVE PPSDNDFVQD RRLECVDDPN KLSNSMHILH QRITDVKQND SIFQHDVPNE  300
NFESGDQVLL PCEPIALPDY VCSVNTLQEQ LDFRSSDNTS ADIRSHLEYA EYLLMEDNNT  360
TEATTVSDTF WLNENIGEGY NLESFLDESF DVNNLKNEEL SDYYNYDQQI NLLNSRTNAE  420
FHSDGVISKG GESNELCINI PGLEDHGTEV NMEDLYILNS DFDISSILGD IF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-2060122363ATERF1
3gcc_A8e-2060122363ATERF1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019248910.10.0PREDICTED: dehydration-responsive element-binding protein 2B-like
TrEMBLA0A1J6I9X90.0A0A1J6I9X9_NICAT; Dehydration-responsive element-binding protein 2a
STRINGXP_009768300.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA79651530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40350.19e-37ERF family protein