PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03188g06001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 357aa    MW: 39254.9 Da    PI: 8.1391
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03188g06001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding65.31.1e-201661147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                              +g+W++eEdell ++v+++G+++W++I++ ++ gR++k+c++rw + 
  Niben101Scf03188g06001.1 16 KGPWSPEEDELLQQLVHKHGPRNWSLISKSIP-GRSGKSCRLRWCNQ 61
                              79******************************.***********985 PP
2Myb_DNA-binding574.4e-1870112347
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                               ++T+eEde +++a++++G++ W+tIar ++ gRt++ +k++w++ 
  Niben101Scf03188g06001.1  70 AFTPEEDETIIRAHARFGNK-WATIARLLN-GRTDNAIKNHWNST 112
                               79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.8951166IPR017930Myb domain
SuperFamilySSF466892.66E-3213109IPR009057Homeodomain-like
SMARTSM007174.0E-181564IPR001005SANT/Myb domain
PfamPF002491.6E-201661IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.6E-271769IPR009057Homeodomain-like
CDDcd001671.84E-171860No hitNo description
SMARTSM007173.8E-1567115IPR001005SANT/Myb domain
PROSITE profilePS5129421.44768117IPR017930Myb domain
CDDcd001672.37E-1270113No hitNo description
Gene3DG3DSA:1.10.10.601.8E-2370116IPR009057Homeodomain-like
PfamPF002491.4E-1570112IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MANSSNSSKK DMDRVKGPWS PEEDELLQQL VHKHGPRNWS LISKSIPGRS GKSCRLRWCN  60
QLSPQVEHRA FTPEEDETII RAHARFGNKW ATIARLLNGR TDNAIKNHWN STLKRKSSSL  120
SADEGNELVD QIFQNQQPPL KRSVSAGSAM PVSGFHFSPG SPSGSDSDSS LHVTSSSQSH  180
LFKPVARAGG VFPPPSIDTS SPSDDPPTSL SLSLPGVDLA EFSNRSAEST QSKNPFQMLP  240
VAIQILPPPP PPPQAAVVSF QRAPLDQDVA AGEQQDKVFV PFSQELLGVM QEMIKAEVRN  300
YMVGIEQQQQ KHYQQQQQFQ QQNHQMQSGI GLGLCMQQAT DGFRNTGANR MGVSKID
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C7e-40151163104C-Myb DNA-Binding Domain
1msf_C7e-40151163104C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00476DAPTransfer from AT4G37260Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016442421.10.0PREDICTED: transcription factor MYB44-like
TrEMBLA0A1S3XR470.0A0A1S3XR47_TOBAC; transcription factor MYB44-like
STRINGXP_009798591.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15862471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.13e-76myb domain protein r1