PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03169g06008.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 172aa    MW: 19936.3 Da    PI: 7.9753
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03169g06008.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.61.2e-191569256
                              T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                              +++ ++t++q++ Le  F++n++++ +++ +LA++lgL+ rqV +W+qN+Ra++k
  Niben101Scf03169g06008.1 15 CHKKRLTQDQVRLLEISFNSNNKLDSDKKSQLAQELGLPPRQVAIWYQNKRARWK 69
                              567789************************************************9 PP
2HD-ZIP_I/II115.23.8e-3716107293
               HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 
                               +k+rl+++qv+lLE sF++++kL++++K++la+eLgl prqva+W+qn+RAR+k++ lE+dy++L++++d+ +++nerL+ eve+
  Niben101Scf03169g06008.1  16 HKKRLTQDQVRLLEISFNSNNKLDSDKKSQLAQELGLPPRQVAIWYQNKRARWKSQSLEVDYKVLQQRFDNAMSDNERLKLEVER 100
                               69*********************************************************************************** PP

               HD-ZIP_I/II  87 Lreelke 93 
                               L+eel++
  Niben101Scf03169g06008.1 101 LKEELNK 107
                               ***9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.181171IPR001356Homeobox domain
SMARTSM003891.7E-171475IPR001356Homeobox domain
PfamPF000467.4E-171669IPR001356Homeobox domain
SuperFamilySSF466899.39E-181680IPR009057Homeodomain-like
CDDcd000863.82E-151672No hitNo description
Gene3DG3DSA:1.10.10.609.5E-201878IPR009057Homeodomain-like
PRINTSPR000317.4E-64251IPR000047Helix-turn-helix motif
PROSITE patternPS0002704669IPR017970Homeobox, conserved site
PRINTSPR000317.4E-65167IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009646Biological Processresponse to absence of light
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MDFFNSQTRK NNLKCHKKRL TQDQVRLLEI SFNSNNKLDS DKKSQLAQEL GLPPRQVAIW  60
YQNKRARWKS QSLEVDYKVL QQRFDNAMSD NERLKLEVER LKEELNKAQE MLLAFNTTTN  120
NYSSISSSCD EVGSSCLQLH DQSKHNLDKE LYACLIGDEG HFGHNFSASS MS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1818RKNNLKCHKKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009800499.11e-120PREDICTED: homeobox-leucine zipper protein ATHB-52-like
TrEMBLA0A1J6IZQ91e-119A0A1J6IZQ9_NICAT; Homeobox-leucine zipper protein athb-52
STRINGXP_009800499.11e-120(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27152453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.18e-28homeobox protein 52