PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf03169g00006.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HB-other

Protein Properties

Length: 1488aa MW: 166913 Da PI: 5.3612

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf03169g00006.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.6	4.9e-19	24	79	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++++ yps+ +r+eL++klgLt+rq ++WF+ rR k+k+ Niben101Scf03169g00006.1 24 PKRQMKTPFQLETLERVYAMETYPSEPTRAELSEKLGLTDRQLQMWFCHRRLKDKN 79 69***************************************************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.1E-18	10	79	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.99E-17	13	79	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.277	20	80	IPR001356	Homeobox domain
SMART	SM00389	3.4E-18	22	84	IPR001356	Homeobox domain
Pfam	PF00046	1.3E-16	24	78	IPR001356	Homeobox domain
CDD	cd00086	2.61E-14	25	81	No hit	No description
SMART	SM00571	3.0E-16	549	608	IPR018501	DDT domain
PROSITE profile	PS50827	14.116	549	608	IPR018501	DDT domain
Pfam	PF02791	4.7E-15	553	605	IPR018501	DDT domain
Pfam	PF05066	1.0E-12	730	797	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	2.1E-5	914	957	IPR028942	WHIM1 domain
Pfam	PF15613	1.6E-13	1086	1158	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1488 aa Download sequence Send to blast
MDGGSEGEGD RNVNQSSSEG PKKPKRQMKT PFQLETLERV YAMETYPSEP TRAELSEKLG 60 LTDRQLQMWF CHRRLKDKNT SGGTEKKPRA GESGGRRNLT VSPREDLMVA EAASDRGSGS 120 ASRSGSGSGS SRFDNGDGMP TPPVRYYESP RRTMERRVIA CIEAQLGEPL REDGPILGVE 180 FDELPPGAFG TPIEMGERRD HYRHSYDSKL YGSYGAKQIN VGSALSLSPA MTSGHREPAE 240 PKIVSDKFGQ IAAPYLYDSP VDGPSKNLPI MQGNGHFVRE YGVEGQSINV MSQQSRQGRF 300 PSPQRDNEFV PSNEDMVQLD RKRKLSEEAR IGKEVQANEK RIRKELEKQD LLRRKVWNIY 360 ISGYREEQMK KEMERQDRER RKEEQRLMRE QQRKEERFQR EEKREMERRE RFLQKELLRV 420 ERKKQKEEHR KEKEAAKQKV AMERAMARRI AKESMELIED ERLELMDLAA SSKGLLSIAS 480 LGYDTLQNLE SFRESLCEFP PKSVQLKKPF SIQPWNGSDD NIGNLLMEGL KLDIKETVES 540 GLFSAFELNV KPSDFLQAWR FCLNFADVLG LWPFTLDEFL QAFHDYDSRL LAEIHIALLK 600 LIIKDIEDVA RTPSGGPGTN QYSAVNPEGG HPQIVEGAYL WGFDIRNWQK HLTPLTWPEV 660 LRQFTLSAGF GPPLKKKRER ACLNDSDETK GCEDVVSTLR SGSAAEKAIA IMQEKGFMSQ 720 RKSRHRLTPG TVKFAAYHVL ALEGDKGLNV LDIAERIQKS GLRDLSTSKT PEASISVALS 780 RDPILFERIA PSTYNVRLAF RKDPADADAV ISAAKEKIQR YANGFLSGQN AEDEERDDDS 840 EGEGDVAEGP EVDDLGTPYG ANKNSEQCSI LDTCLVNGKS KPSDEVAQQI GVDVTGIEGS 900 NPSQECSEID ESKAGQPWVQ GLAEGEYSDL CVEERLNALV ALIGIANEGN CIRVILEDRL 960 DAANALKKQM WAEAQLDKRR LKEETINKFT DSSFNAVVEG SQSPFGVSNS KNQGTAPTML 1020 VKDESAVVVD NVQNHFESIS AEKSSVAQET FMGELAIQPS GSTAERSRMQ LKSFIGHKAE 1080 EMYVYRSLPL GQDRRRNRYW LFVASGSSED PGSGRIFVES PHGCWRLIDT EEAFDCLLAS 1140 LDIRGVRESH LHIMLQKIEG PFKERVRRNM SYDDIIVQHG NKCKNESSAA SSSPASGAGA 1200 DSPSSTIYGM GSDSWETSSS FKIELGKNEE ERKNAFKRYQ GFQSWMWKEC LSSSILCAMR 1260 YGKKRCLPLL GICGHCLDSY PSEEGNCPSC NKMSGKIDMN AEFPEQAMDS MDNLKYDYNK 1320 LAVSHACPLR VRLMKALLSF LEVYVPCEAL QSSWTEDRRK TWGMTLQNSL SPEDLLQILT 1380 QLEGVTKRDY LSADYETAEE LMGLCALSIN ATCESTYPGS VPQLPWIPQT TGAVALRLSE 1440 LDASISYDPR QKTEAELKNK VDSLPVELSY PVIQVILLLT TLGFAIYP

Sequence ? help Back to Top

Protein Sequence Length: 1488 aa Download sequence Send to blast

MDGGSEGEGD RNVNQSSSEG PKKPKRQMKT PFQLETLERV YAMETYPSEP TRAELSEKLG  60
LTDRQLQMWF CHRRLKDKNT SGGTEKKPRA GESGGRRNLT VSPREDLMVA EAASDRGSGS  120
ASRSGSGSGS SRFDNGDGMP TPPVRYYESP RRTMERRVIA CIEAQLGEPL REDGPILGVE  180
FDELPPGAFG TPIEMGERRD HYRHSYDSKL YGSYGAKQIN VGSALSLSPA MTSGHREPAE  240
PKIVSDKFGQ IAAPYLYDSP VDGPSKNLPI MQGNGHFVRE YGVEGQSINV MSQQSRQGRF  300
PSPQRDNEFV PSNEDMVQLD RKRKLSEEAR IGKEVQANEK RIRKELEKQD LLRRKVWNIY  360
ISGYREEQMK KEMERQDRER RKEEQRLMRE QQRKEERFQR EEKREMERRE RFLQKELLRV  420
ERKKQKEEHR KEKEAAKQKV AMERAMARRI AKESMELIED ERLELMDLAA SSKGLLSIAS  480
LGYDTLQNLE SFRESLCEFP PKSVQLKKPF SIQPWNGSDD NIGNLLMEGL KLDIKETVES  540
GLFSAFELNV KPSDFLQAWR FCLNFADVLG LWPFTLDEFL QAFHDYDSRL LAEIHIALLK  600
LIIKDIEDVA RTPSGGPGTN QYSAVNPEGG HPQIVEGAYL WGFDIRNWQK HLTPLTWPEV  660
LRQFTLSAGF GPPLKKKRER ACLNDSDETK GCEDVVSTLR SGSAAEKAIA IMQEKGFMSQ  720
RKSRHRLTPG TVKFAAYHVL ALEGDKGLNV LDIAERIQKS GLRDLSTSKT PEASISVALS  780
RDPILFERIA PSTYNVRLAF RKDPADADAV ISAAKEKIQR YANGFLSGQN AEDEERDDDS  840
EGEGDVAEGP EVDDLGTPYG ANKNSEQCSI LDTCLVNGKS KPSDEVAQQI GVDVTGIEGS  900
NPSQECSEID ESKAGQPWVQ GLAEGEYSDL CVEERLNALV ALIGIANEGN CIRVILEDRL  960
DAANALKKQM WAEAQLDKRR LKEETINKFT DSSFNAVVEG SQSPFGVSNS KNQGTAPTML  1020
VKDESAVVVD NVQNHFESIS AEKSSVAQET FMGELAIQPS GSTAERSRMQ LKSFIGHKAE  1080
EMYVYRSLPL GQDRRRNRYW LFVASGSSED PGSGRIFVES PHGCWRLIDT EEAFDCLLAS  1140
LDIRGVRESH LHIMLQKIEG PFKERVRRNM SYDDIIVQHG NKCKNESSAA SSSPASGAGA  1200
DSPSSTIYGM GSDSWETSSS FKIELGKNEE ERKNAFKRYQ GFQSWMWKEC LSSSILCAMR  1260
YGKKRCLPLL GICGHCLDSY PSEEGNCPSC NKMSGKIDMN AEFPEQAMDS MDNLKYDYNK  1320
LAVSHACPLR VRLMKALLSF LEVYVPCEAL QSSWTEDRRK TWGMTLQNSL SPEDLLQILT  1380
QLEGVTKRDY LSADYETAEE LMGLCALSIN ATCESTYPGS VPQLPWIPQT TGAVALRLSE  1440
LDASISYDPR QKTEAELKNK VDSLPVELSY PVIQVILLLT TLGFAIYP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269\|PubMed:22694359}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019262975.1	0.0	PREDICTED: homeobox-DDT domain protein RLT1 isoform X2
Swissprot	F4HY56	0.0	RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBL	A0A314L977	0.0	A0A314L977_NICAT; Homeobox-ddt domain protein rlt1
STRING	XP_009781785.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2142	23	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	homeobox-1