PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03150g06002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family RAV
Protein Properties Length: 386aa    MW: 43330.9 Da    PI: 9.6271
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03150g06002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.41.8e-1363111155
                       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               s+ykGV   + +grW A+I++      ++r++lg+f  ++eAa+a++ a+++++g
  Niben101Scf03150g06002.1  63 SRYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEENEAARAYDVAAQRFRG 111
                               78****9888.8*********3.....5*************************98 PP
2B3104.55.6e-33198295194
                               EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                               f+k+ tpsdv+k++rlv+pk++ae+h    +g++ +++ l +ed++g++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v 
  Niben101Scf03150g06002.1 198 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqNGNTSKGVLLNFEDLNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVS 282
                               89****************************99999************************************************** PP

                               EEE-SSSEE..EE CS
                        B3  82 Fkldgrsefelvv 94 
                               F+++   +++l++
  Niben101Scf03150g06002.1 283 FQRSTGGDKQLYI 295
                               **77556665665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.14E-1763119IPR016177DNA-binding domain
PfamPF008474.3E-963111IPR001471AP2/ERF domain
CDDcd000182.34E-2663118No hitNo description
PROSITE profilePS5103220.27164119IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-2064119IPR001471AP2/ERF domain
SMARTSM003801.7E-3064125IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.104.2E-42191304IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.93E-31196295IPR015300DNA-binding pseudobarrel domain
CDDcd100171.17E-29197286No hitNo description
SMARTSM010195.2E-26198301IPR003340B3 DNA binding domain
PROSITE profilePS5086315.199198301IPR003340B3 DNA binding domain
PfamPF023624.1E-30198297IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009910Biological Processnegative regulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MEGSSSIDES TTSDSLSIAP AISTSTLPVT KSPESLCRMG SGTSVIIDAE NGVEAESRKL  60
PSSRYKGVVP QPNGRWGAQI YEKHQRVWLG TFNEENEAAR AYDVAAQRFR GRDAVTNFKP  120
LLENEENDDM EIAFLNSHSK AEIVDMLRKH TYIDELEQSK KNYGFNKDGK RAYCTKDGLM  180
SSFFSSVDKV NKAREQLFEK AVTPSDVGKL NRLVIPKQHA EKHFPLQNGN TSKGVLLNFE  240
DLNGKVWRFR YSYWNSSQSY VLTKGWSRFV KEKNLKAGDI VSFQRSTGGD KQLYIDFKAR  300
NTTPTISPAV ISQVQVQVQA PQIQMVRLFG VNICKVPAVS NVVIDNNNNN NNNSMTSCSG  360
GKRRIEMELL TFESCRKKQR VTINAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A4e-5919530311120DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00139DAPTransfer from AT1G13260Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009613275.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor RAV1
RefseqXP_016512131.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor RAV1-like
SwissprotQ9ZWM91e-146RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1
TrEMBLA0A1S4DFM00.0A0A1S4DFM0_TOBAC; AP2/ERF and B3 domain-containing transcription factor RAV1-like
STRINGXP_009613275.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29582453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-143related to ABI3/VP1 1
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  3. Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF
    Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development.
    PLoS Genet., 2016. 12(2): p. e1005833
    [PMID:26829043]
  4. Zhao Y, et al.
    ABA receptor PYL9 promotes drought resistance and leaf senescence.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(7): p. 1949-54
    [PMID:26831097]